{ "type": "genome", "identifier": "GCF_009913235.1", "organism": "Nibribacter ruber", "title": "Nibribacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009913235.1", "bioproject": "PRJNA224116", "biosample": "SAMN13841288", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2698458", "species_taxid": "2698458", "organism_name": "Nibribacter ruber", "infraspecific_name": "strain=BT10", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/22", "asm_name": "ASM991323v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_009913235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/913/235/GCF_009913235.1_ASM991323v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4352178", "genome_size_ungapped": "4352178", "gc_percent": "50.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009913235.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3686", "protein_coding_gene_count": "3625", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-22", "dateModified": "2020-01-22", "datePublished": "2020-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nibribacter ruber" ], "sample_taxid": [ "2698458" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pyeongchang-gun" ], "sample_host_location_id": [], "data_size": "1.233 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4352178", "Number of Sequences": "1", "Longest Sequences (bp)": "4352178", "N50 (bp)": "4352178", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.3", "Number of CDSs": "3611", "Average Protein Length": "338.4", "Coding Ratio (%)": "84.2", "Number of rRNAs": "9", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rufibacter radiotolerans", "strain": "strain=DG31D", "accession": "GCA_001078055.1", "taxid": 1379910, "species_taxid": 1379910, "relation_to_type": "type", "validated": true, "ani": 79.658, "matched_fragments": 697, "total_fragments": 1450, "ani_threshold": 95, 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"Rufibacter sediminis", "strain": "strain=H-1", "accession": "GCA_014269285.1", "taxid": 2762756, "species_taxid": 2762756, "relation_to_type": "type", "validated": true, "ani": 79.0392, "matched_fragments": 685, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter glacialis", "strain": "strain=CGMCC 1.9789", "accession": "GCA_014645715.1", "taxid": 1259555, "species_taxid": 1259555, "relation_to_type": "type", "validated": true, "ani": 79.037, "matched_fragments": 647, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter hautae", "strain": "strain=NBS58-1", "accession": "GCA_008271695.1", "taxid": 2595005, "species_taxid": 2595005, "relation_to_type": "type", "validated": true, "ani": 78.9001, "matched_fragments": 688, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter latericius", "strain": "strain=R-22-1 c-1", "accession": "GCA_003721515.1", "taxid": 2487040, "species_taxid": 2487040, "relation_to_type": "type", "validated": true, "ani": 78.8068, "matched_fragments": 622, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter tibetensis", "strain": "strain=1351", "accession": "GCA_001310085.1", "taxid": 512763, "species_taxid": 512763, "relation_to_type": "type", "validated": true, "ani": 78.5437, "matched_fragments": 536, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter arcticus", "strain": "strain=2b14", "accession": "GCA_003284895.1", "taxid": 2080288, "species_taxid": 2080288, "relation_to_type": "type", "validated": true, "ani": 77.1349, "matched_fragments": 95, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter russatus", "strain": "strain=BT326", "accession": "GCA_009931655.1", "taxid": 2694929, "species_taxid": 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001078055.1", "gtdb_species": "s__Rufibacter radiotolerans", "ani": 79.6389, "matched_fragments": 697, "total_fragments": 1450, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Rufibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014876185.1", "gtdb_species": "s__Rufibacter sp014876185", "ani": 79.3495, "matched_fragments": 710, "total_fragments": 1450, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Rufibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": 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