{ "type": "genome", "identifier": "GCF_009913435.1", "organism": "Sphingomonas changnyeongensis", "title": "Sphingomonas changnyeongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009913435.1", "bioproject": "PRJNA224116", "biosample": "SAMN13864533", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2698679", "species_taxid": "2698679", "organism_name": "Sphingomonas changnyeongensis", "infraspecific_name": "strain=C33", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/22", "asm_name": "ASM991343v1", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_009913435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/913/435/GCF_009913435.1_ASM991343v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3005093", "genome_size_ungapped": "3005093", "gc_percent": "68.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009913435.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2972", "protein_coding_gene_count": "2702", "non_coding_gene_count": "56", "pubmed_id": "33048038" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-22", "dateModified": "2020-01-22", "datePublished": "2020-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas changnyeongensis" ], "sample_taxid": [ "2698679" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Hapcheon" ], "sample_host_location_id": [], "data_size": "0.806 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3005093", "Number of Sequences": "2", "Longest Sequences (bp)": "2869229", "N50 (bp)": "2869229", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "3031", "Average Protein Length": "297.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1001, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, "relation_to_type": "type", "validated": true, "ani": 80.6046, "matched_fragments": 521, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changbaiensis", "strain": "strain=NBRC 104936", "accession": "GCA_000974765.1", "taxid": 529705, "species_taxid": 529705, "relation_to_type": "type", "validated": true, "ani": 80.2184, "matched_fragments": 495, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 79.7373, "matched_fragments": 459, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas abaci", "strain": "strain=DSM 15867", "accession": "GCA_014199625.1", "taxid": 237611, "species_taxid": 237611, "relation_to_type": "type", "validated": true, "ani": 79.209, "matched_fragments": 458, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 79.173, "matched_fragments": 413, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 79.1653, "matched_fragments": 393, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pituitosa", "strain": "strain=NBRC 102491", "accession": "GCA_001598435.1", "taxid": 99597, "species_taxid": 99597, "relation_to_type": "type", "validated": true, "ani": 79.0918, "matched_fragments": 441, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pokkalii", "strain": "strain=L3B27", "accession": "GCA_003096275.1", "taxid": 2175090, "species_taxid": 2175090, "relation_to_type": "type", "validated": true, "ani": 79.0535, "matched_fragments": 421, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 79.0097, "matched_fragments": 459, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 79.0054, "matched_fragments": 429, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jatrophae", "strain": "strain=S5-249", "accession": "GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 78.9769, "matched_fragments": 389, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas paucimobilis", "strain": "strain=NBRC 13935", "accession": "GCA_000739895.2", "taxid": 13689, "species_taxid": 13689, "relation_to_type": "type", "validated": true, "ani": 78.9656, "matched_fragments": 413, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 78.8535, "matched_fragments": 432, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 78.7799, "matched_fragments": 380, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 78.7062, "matched_fragments": 445, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 78.6309, "matched_fragments": 412, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oligoaromativorans", "strain": "strain=DSM 102246", "accession": "GCA_011762195.1", "taxid": 575322, "species_taxid": 575322, "relation_to_type": "type", "validated": true, "ani": 78.5618, "matched_fragments": 383, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 78.5234, "matched_fragments": 421, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 78.4989, "matched_fragments": 442, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 78.3672, "matched_fragments": 385, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 78.2843, "matched_fragments": 386, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009913435.1", "gtdb_species": "s__Sphingomonas_B sp009913435", "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1001, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002291855.1", "gtdb_species": "s__Sphingomonas_B sp002291855", "ani": 91.63, "matched_fragments": 607, "total_fragments": 1001, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009753715.1", "gtdb_species": "s__Sphingomonas_B horti", "ani": 80.6109, "matched_fragments": 520, "total_fragments": 1001, "gtdb_taxonomy": 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