{ "type": "genome", "identifier": "GCF_009915155.1", "organism": "Flavobacterium ichthyis", "title": "Flavobacterium ichthyis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009915155.1", "bioproject": "PRJNA224116", "biosample": "SAMN13870489", "wgs_master": "JAABLM000000000.1", "refseq_category": "reference genome", "taxid": "2698827", "species_taxid": "2698827", "organism_name": "Flavobacterium ichthyis", "infraspecific_name": "strain=NST-5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/22", "asm_name": "ASM991515v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_009915155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/915/155/GCF_009915155.1_ASM991515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2860955", "genome_size_ungapped": "2860955", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009915155.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2631", "protein_coding_gene_count": "2573", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-22", "dateModified": "2020-01-22", "datePublished": "2020-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium ichthyis" ], "sample_taxid": [ "2698827" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2860955", "Number of Sequences": "37", "Longest Sequences (bp)": "380649", "N50 (bp)": "199448", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "2546", "Average Protein Length": "331.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium ichthyis", "strain": "strain=NST-5", "accession": "GCA_009915155.1", "taxid": 2698827, "species_taxid": 2698827, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 937, "total_fragments": 938, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium macacae", "strain": "strain=YIM 102600", "accession": "GCA_003865365.1", "taxid": 2488993, "species_taxid": 2488993, "relation_to_type": "type", "validated": true, "ani": 78.7524, "matched_fragments": 339, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gossypii", "strain": "strain=DSM 100397", "accession": "GCA_014138495.1", "taxid": 1646119, "species_taxid": 1646119, "relation_to_type": "type", "validated": true, "ani": 78.3053, "matched_fragments": 260, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 78.2068, "matched_fragments": 271, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 77.8828, "matched_fragments": 262, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 77.8637, "matched_fragments": 247, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium orientale", "strain": "strain=CGMCC 1.12506", "accession": "GCA_014638005.1", "taxid": 1756020, "species_taxid": 1756020, "relation_to_type": "type", "validated": true, "ani": 77.7315, "matched_fragments": 181, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=DSM 1076", "accession": "GCA_900142775.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.6209, "matched_fragments": 179, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.5245, "matched_fragments": 166, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 77.5121, "matched_fragments": 201, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.5012, "matched_fragments": 171, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=CGMCC 1.6844", "accession": "GCA_007830415.1", "taxid": 295428, "species_taxid": 295428, "relation_to_type": "type", "validated": true, "ani": 77.4482, "matched_fragments": 201, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 77.4436, "matched_fragments": 203, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.4297, "matched_fragments": 206, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.4185, "matched_fragments": 182, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sasangense", "strain": "strain=DSM 21067", "accession": "GCA_000686885.1", "taxid": 503361, "species_taxid": 503361, "relation_to_type": "type", "validated": true, "ani": 77.3994, "matched_fragments": 201, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.3886, "matched_fragments": 198, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.3821, "matched_fragments": 186, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.3562, "matched_fragments": 182, "total_fragments": 938, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cucumis", "strain": "strain=DSM 18830", "accession": "GCA_900148835.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "ichthyis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }