{ "type": "genome", "identifier": "GCF_009917485.1", "organism": "Parablautia muri", "title": "Parablautia muri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009917485.1", "bioproject": "PRJNA224116", "biosample": "SAMN10053188", "wgs_master": "QZDT00000000.1", "refseq_category": "reference genome", "taxid": "2320879", "species_taxid": "2320879", "organism_name": "Parablautia muri", "infraspecific_name": "strain=D42-62", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/22", "asm_name": "ASM991748v1", "asm_submitter": "Chinese Academy of Science", "gbrs_paired_asm": "GCA_009917485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/917/485/GCF_009917485.1_ASM991748v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5152081", "genome_size_ungapped": "5152081", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "214", "contig_count": "214", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009917485.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5156", "protein_coding_gene_count": "4932", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-22", "dateModified": "2020-01-22", "datePublished": "2020-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Parablautia muri" ], "sample_taxid": [ "2320879" ], "sample_host_organism": [ "ob/ob mouse" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "1.462 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5152081", "Number of Sequences": "214", "Longest Sequences (bp)": "455147", "N50 (bp)": "92084", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "5091", "Average Protein Length": "285.6", "Coding Ratio (%)": "84.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactonifactor longoviformis", "strain": "strain=DSM 17459", "accession": "GCA_900129135.1", "taxid": 341220, "species_taxid": 341220, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9708, "matched_fragments": 70, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 78.7647, "matched_fragments": 57, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 78.6962, "matched_fragments": 129, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 78.1594, "matched_fragments": 58, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 77.755, "matched_fragments": 121, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 77.6419, "matched_fragments": 61, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactonifactor longoviformis", "strain": "strain=DSM 17459", "accession": "GCA_002915525.1", "taxid": 341220, "species_taxid": 341220, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5202, "matched_fragments": 55, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=KNHs209", "accession": "GCA_000732725.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.7167, "matched_fragments": 84, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=DSM 100556", "accession": "GCA_004345255.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.623, "matched_fragments": 80, "total_fragments": 1619, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009917485.1", "gtdb_species": "s__CAG-95 sp009917485", "ani": 100.0, "matched_fragments": 1612, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003612395.1", "gtdb_species": "s__CAG-95 sp003612395", "ani": 82.9651, "matched_fragments": 958, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587305.1", "gtdb_species": "s__CAG-95 sp910587305", "ani": 82.694, "matched_fragments": 823, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585075.1", "gtdb_species": "s__CAG-95 sp910585075", "ani": 80.2073, "matched_fragments": 698, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011959285.1", "gtdb_species": "s__CAG-95 sp011959285", "ani": 79.8559, "matched_fragments": 365, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014804785.1", "gtdb_species": "s__CAG-95 sp014804785", "ani": 78.4851, "matched_fragments": 351, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910575075.1", "gtdb_species": "s__14-2 sp910575075", "ani": 77.9227, "matched_fragments": 95, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002492465.1", "gtdb_species": "s__CAG-95 sp002492465", "ani": 77.8861, "matched_fragments": 271, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900554925.1", "gtdb_species": "s__CAG-95 sp900554925", "ani": 77.6398, "matched_fragments": 229, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017938315.1", "gtdb_species": "s__CAG-95 sp017938315", "ani": 77.265, "matched_fragments": 137, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017500935.1", "gtdb_species": "s__Eisenbergiella sp017500935", "ani": 76.0068, "matched_fragments": 57, "total_fragments": 1619, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Parablautia", "muri" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }