{ "type": "genome", "identifier": "GCF_009928685.1", "organism": "Mucilaginibacter agri", "title": "Mucilaginibacter agri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "chungang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009928685.1", "bioproject": "PRJNA224116", "biosample": "SAMN13715586", "wgs_master": "WWEO00000000.1", "refseq_category": "reference genome", "taxid": "2695265", "species_taxid": "2695265", "organism_name": "Mucilaginibacter agri", "infraspecific_name": "strain=R11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/24", "asm_name": "ASM992868v1", "asm_submitter": "chungang university", "gbrs_paired_asm": "GCA_009928685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/928/685/GCF_009928685.1_ASM992868v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5607981", "genome_size_ungapped": "5607981", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009928685.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4936", "protein_coding_gene_count": "4859", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-24", "dateModified": "2020-01-24", "datePublished": "2020-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter agri" ], "sample_taxid": [ "2695265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Suwon park soil" ], "sample_host_location_id": [], "data_size": "1.595 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5607981", "Number of Sequences": "45", "Longest Sequences (bp)": "1128216", "N50 (bp)": "791005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.7", "Number of CDSs": "4790", "Average Protein Length": "344.0", "Coding Ratio (%)": "88.1", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1852, "total_fragments": 1855, "ani_threshold": 95, 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"organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 77.8157, "matched_fragments": 297, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter aquatilis", "strain": "strain=HME9299", "accession": "GCA_009755275.1", "taxid": 1517760, "species_taxid": 1517760, "relation_to_type": "type", "validated": true, "ani": 77.8134, "matched_fragments": 215, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter endophyticus", "strain": "strain=RS1", "accession": "GCA_003351025.1", "taxid": 2675003, "species_taxid": 2675003, "relation_to_type": "type", "validated": true, "ani": 77.6786, "matched_fragments": 297, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter 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"s__Mucilaginibacter sp009928685", "ani": 100.0, "matched_fragments": 1852, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903644075.1", "gtdb_species": "s__Mucilaginibacter sp903644075", "ani": 80.9243, "matched_fragments": 728, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001911425.1", "gtdb_species": 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