{ "type": "genome", "identifier": "GCF_009931615.1", "organism": "Algicella marina", "title": "Algicella marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009931615.1", "bioproject": "PRJNA224116", "biosample": "SAMN13509249", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2683284", "species_taxid": "2683284", "organism_name": "Algicella marina", "infraspecific_name": "strain=9Alg 56", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/27", "asm_name": "ASM993161v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_009931615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/931/615/GCF_009931615.1_ASM993161v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3994758", "genome_size_ungapped": "3994758", "gc_percent": "61.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009931615.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "3938", "protein_coding_gene_count": "3872", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-27", "dateModified": "2020-01-27", "datePublished": "2020-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Algicella marina" ], "sample_taxid": [ "2683284" ], "sample_host_organism": [ "Tichocarpus crinitus (red alga)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "1.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3994758", "Number of Sequences": "1", "Longest Sequences (bp)": "3994758", "N50 (bp)": "3994758", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3905", "Average Protein Length": "310.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, 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"matched_fragments": 276, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 77.2163, "matched_fragments": 243, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 77.2003, "matched_fragments": 169, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 77.1832, "matched_fragments": 227, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola variabilis", "strain": "strain=CECT 8572", "accession": "GCA_014195545.1", "taxid": 1492771, "species_taxid": 1492771, "relation_to_type": "type", "validated": true, "ani": 77.1259, "matched_fragments": 186, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=CeCT 8812", "accession": "GCA_900302495.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 77.0824, "matched_fragments": 122, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=DSM 103361", "accession": "GCA_003385715.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 77.0743, "matched_fragments": 123, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.023, "matched_fragments": 197, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 77.0051, "matched_fragments": 168, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9985, "matched_fragments": 191, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": 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"GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 76.8854, "matched_fragments": 178, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum griseiflavum", "strain": "strain=WDS4C29", "accession": "GCA_003129565.1", "taxid": 1914409, "species_taxid": 1914409, "relation_to_type": "type", "validated": true, "ani": 76.8792, "matched_fragments": 162, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus macauensis", "strain": "strain=DSM 101730", "accession": "GCA_014201905.1", "taxid": 57001, "species_taxid": 57001, "relation_to_type": "type", "validated": true, "ani": 76.8135, "matched_fragments": 181, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria lutimaris", "strain": "strain=DSM 25294", "accession": "GCA_900099935.1", "taxid": 571298, "species_taxid": 571298, "relation_to_type": "type", "validated": true, "ani": 76.8119, "matched_fragments": 182, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviimonas aquaemixtae", "strain": "strain=CECT 8626", "accession": "GCA_900302475.1", "taxid": 1542388, "species_taxid": 1542388, "relation_to_type": "type", "validated": true, "ani": 76.8105, "matched_fragments": 180, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium mesophilum", "strain": "strain=DSM 19309", "accession": "GCA_000600335.2", "taxid": 1123067, "species_taxid": 1123067, "relation_to_type": "type", "validated": true, "ani": 76.7634, "matched_fragments": 153, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria sabulilitoris", "strain": "strain=GJMS-35", "accession": "GCA_001558155.1", "taxid": 1510458, "species_taxid": 1510458, "relation_to_type": "type", 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009931615.1", "gtdb_species": "s__Halovulum sp009931615", "ani": 100.0, "matched_fragments": 1330, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002797755.1", "gtdb_species": "s__Brevirhabdus pacifica", "ani": 78.0484, "matched_fragments": 200, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Brevirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", 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