{ "type": "genome", "identifier": "GCF_009931655.1", "organism": "Pontibacter russatus", "title": "Pontibacter russatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009931655.1", "bioproject": "PRJNA224116", "biosample": "SAMN13706907", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2694929", "species_taxid": "2694929", "organism_name": "Pontibacter russatus", "infraspecific_name": "strain=BT326", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/27", "asm_name": "ASM993165v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_009931655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/931/655/GCF_009931655.1_ASM993165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4965849", "genome_size_ungapped": "4965849", "gc_percent": "54.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009931655.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4151", "protein_coding_gene_count": "4051", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-27", "dateModified": "2020-01-27", "datePublished": "2020-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter russatus" ], "sample_taxid": [ "2694929" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.405 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4965849", "Number of Sequences": "1", "Longest Sequences (bp)": "4965849", "N50 (bp)": "4965849", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "4125", "Average Protein Length": "335.8", "Coding Ratio (%)": "83.7", "Number of rRNAs": "9", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibacter russatus", "strain": "strain=BT326", "accession": "GCA_009931655.1", "taxid": 2694929, "species_taxid": 2694929, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter mangrovi", "strain": "strain=HB172049", "accession": "GCA_006385705.1", "taxid": 2589816, "species_taxid": 2589816, "relation_to_type": "type", "validated": true, "ani": 79.6549, "matched_fragments": 697, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter flavimaris", "strain": "strain=S10-8", "accession": "GCA_001907195.1", "taxid": 1797110, "species_taxid": 1797110, "relation_to_type": "type", "validated": true, "ani": 79.5815, "matched_fragments": 735, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mucosus", "strain": "strain=DSM 100162", "accession": "GCA_003054055.1", "taxid": 1649266, "species_taxid": 1649266, "relation_to_type": "type", "validated": true, "ani": 79.1802, "matched_fragments": 663, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter 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"GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 78.7852, "matched_fragments": 630, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 78.1491, "matched_fragments": 466, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_900188175.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 78.1053, "matched_fragments": 517, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_003002015.1", "taxid": 1610492, "species_taxid": 1610492, 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1655, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003367245.1", "gtdb_species": "s__Pontibacter diazotrophicus", "ani": 79.1624, "matched_fragments": 750, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003054055.1", "gtdb_species": "s__Pontibacter mucosus", "ani": 79.1511, "matched_fragments": 669, "total_fragments": 1655, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pontibacter", "russatus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }