{
    "type": "genome",
    "identifier": "GCF_009932395.1",
    "organism": "Sporotomaculum syntrophicum",
    "title": "Sporotomaculum syntrophicum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009932395.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04439494",
        "wgs_master": "LSRS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "182264",
        "species_taxid": "182264",
        "organism_name": "Sporotomaculum syntrophicum",
        "infraspecific_name": "strain=FB",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/27",
        "asm_name": "ASM993239v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_009932395.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/932/395/GCF_009932395.1_ASM993239v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3352116",
        "genome_size_ungapped": "3240809",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009932395.1-RS_2024_04_15",
        "annotation_date": "2024-04-15",
        "total_gene_count": "3168",
        "protein_coding_gene_count": "3023",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-27",
    "dateModified": "2020-01-27",
    "datePublished": "2020-01-27",
    "_annotation": {
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        "sample_organism": [
            "Sporotomaculum syntrophicum"
        ],
        "sample_taxid": [
            "182264"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Tsukuba"
        ],
        "sample_host_location_id": [],
        "data_size": "0.924 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3352116",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "958753",
        "N50 (bp)": "497366",
        "Gap Ratio (%)": "3.321245",
        "GCcontent (%)": "44.9",
        "Number of CDSs": "3033",
        "Average Protein Length": "290.2",
        "Coding Ratio (%)": "78.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "13"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sporotomaculum syntrophicum",
                "strain": "strain=FB",
                "accession": "GCA_009932395.1",
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                "species_taxid": 182264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9987,
                "matched_fragments": 1077,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfotruncus alcoholivorax",
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                "accession": "GCA_000430885.1",
                "taxid": 265477,
                "species_taxid": 265477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.786,
                "matched_fragments": 94,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfoscipio geothermicus",
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                "accession": "GCA_900115975.1",
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                "species_taxid": 39060,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_009932395.1",
                "gtdb_species": "s__Sporotomaculum syntrophicum",
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                "total_fragments": 1101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016841905.1",
                "gtdb_species": "s__Sporotomaculum geothermicum_C",
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                "matched_fragments": 774,
                "total_fragments": 1101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841645.1",
                "gtdb_species": "s__Sporotomaculum geothermicum_B",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841205.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000233715.2",
                "gtdb_species": "s__Sporotomaculum gibsoniae",
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                "matched_fragments": 384,
                "total_fragments": 1101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115975.1",
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                "matched_fragments": 131,
                "total_fragments": 1101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Desulfoscipio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Sporotomaculum",
        "syntrophicum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}