{
    "type": "genome",
    "identifier": "GCF_009932475.1",
    "organism": "Gordonia spumicola",
    "title": "Gordonia spumicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NBRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009932475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00170766",
        "wgs_master": "BJOV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "589161",
        "species_taxid": "589161",
        "organism_name": "Gordonia spumicola",
        "infraspecific_name": "strain=NBRC 107696",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/06",
        "asm_name": "ASM993247v1",
        "asm_submitter": "NBRC",
        "gbrs_paired_asm": "GCA_009932475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/932/475/GCF_009932475.1_ASM993247v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4886396",
        "genome_size_ungapped": "4886396",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009932475.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4717",
        "protein_coding_gene_count": "4550",
        "non_coding_gene_count": "69",
        "pubmed_id": "32427091"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-06",
    "dateModified": "2020-01-06",
    "datePublished": "2020-01-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gordonia spumicola"
        ],
        "sample_taxid": [
            "589161"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.315 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4886396",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "2399066",
        "N50 (bp)": "1065311",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.1",
        "Number of CDSs": "4668",
        "Average Protein Length": "320.2",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "12",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gordonia spumicola",
                "strain": "strain=NBRC 107696",
                "accession": "GCA_009932475.1",
                "taxid": 589161,
                "species_taxid": 589161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1598,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia malaquae",
                "strain": "strain=DSM 45064",
                "accession": "GCA_900105435.1",
                "taxid": 410332,
                "species_taxid": 410332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7584,
                "matched_fragments": 1111,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia malaquae",
                "strain": "strain=NBRC 108250",
                "accession": "GCA_000344135.1",
                "taxid": 410332,
                "species_taxid": 410332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4862,
                "matched_fragments": 1087,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia humi",
                "strain": "strain=DSM 45298",
                "accession": "GCA_014197435.1",
                "taxid": 686429,
                "species_taxid": 686429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.566,
                "matched_fragments": 914,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia phthalatica",
                "strain": "strain=QH-11",
                "accession": "GCA_001305675.1",
                "taxid": 1136941,
                "species_taxid": 1136941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0372,
                "matched_fragments": 806,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia neofelifaecis",
                "strain": "strain=NRRL B-59395",
                "accession": "GCA_000192435.2",
                "taxid": 945692,
                "species_taxid": 945692,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.009,
                "matched_fragments": 804,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia zhaorongruii",
                "strain": "strain=HY186",
                "accession": "GCA_007559005.1",
                "taxid": 2597659,
                "species_taxid": 2597659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7164,
                "matched_fragments": 706,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia hydrophobica",
                "strain": "strain=NBRC 16057",
                "accession": "GCA_001592365.1",
                "taxid": 40516,
                "species_taxid": 40516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3426,
                "matched_fragments": 744,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia pseudamarae",
                "strain": "strain=CON9",
                "accession": "GCA_025273675.1",
                "taxid": 2831662,
                "species_taxid": 2831662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6368,
                "matched_fragments": 503,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009932475.1",
                "gtdb_species": "s__Gordonia spumicola",
                "ani": 100.0,
                "matched_fragments": 1600,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000344135.1",
                "gtdb_species": "s__Gordonia malaquae",
                "ani": 84.4865,
                "matched_fragments": 1087,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016919385.1",
                "gtdb_species": "s__Gordonia sp016919385",
                "ani": 83.6895,
                "matched_fragments": 1046,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197435.1",
                "gtdb_species": "s__Gordonia humi",
                "ani": 81.5839,
                "matched_fragments": 912,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001305675.1",
                "gtdb_species": "s__Gordonia phthalatica",
                "ani": 81.0182,
                "matched_fragments": 808,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007559005.1",
                "gtdb_species": "s__Gordonia sp004353055",
                "ani": 80.699,
                "matched_fragments": 708,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012515855.1",
                "gtdb_species": "s__Gordonia sp012515855",
                "ani": 80.4009,
                "matched_fragments": 640,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592365.1",
                "gtdb_species": "s__Gordonia hydrophobica",
                "ani": 80.3044,
                "matched_fragments": 749,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002993285.1",
                "gtdb_species": "s__Gordonia iterans",
                "ani": 79.6636,
                "matched_fragments": 654,
                "total_fragments": 1624,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.29,
        "cell_length": -0.067,
        "doubling_h": null,
        "growth_tmp": 28.984,
        "optimum_tmp": 29.25,
        "optimum_ph": 7.479,
        "genome_size": 4870429.978,
        "gc_content": 67.579,
        "coding_genes": 4526.729,
        "rRNA16S_genes": 2.666,
        "tRNA_genes": 48.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.15,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.05,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gordonia",
        "spumicola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}