{ "type": "genome", "identifier": "GCF_009932725.1", "organism": "Pseudomonas yangonensis", "title": "Pseudomonas yangonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Microbiology, Juntendo University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009932725.1", "bioproject": "PRJNA224116", "biosample": "SAMD00171901", "wgs_master": "BLJU00000000.1", "refseq_category": "reference genome", "taxid": "2579922", "species_taxid": "2579922", "organism_name": "Pseudomonas yangonensis", "infraspecific_name": "strain=MY50", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/17", "asm_name": "ASM993272v1", "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine", "gbrs_paired_asm": "GCA_009932725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/932/725/GCF_009932725.1_ASM993272v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5115180", "genome_size_ungapped": "5115180", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "301", "contig_count": "301", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009932725.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "4881", "protein_coding_gene_count": "4694", "non_coding_gene_count": "65", "pubmed_id": "32501786" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-17", "dateModified": "2020-01-17", "datePublished": "2020-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas yangonensis" ], "sample_taxid": [ "2579922" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Myanmar:Yangon" ], "sample_host_location_id": [], "data_size": "1.425 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5109524", "Number of Sequences": "262", "Longest Sequences (bp)": "823336", "N50 (bp)": "275993", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "4650", "Average Protein Length": "321.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, 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"total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 89.2876, "matched_fragments": 1314, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 89.243, "matched_fragments": 1304, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 89.2207, "matched_fragments": 1319, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 89.1903, "matched_fragments": 1325, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 89.1521, "matched_fragments": 1322, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.6172, "matched_fragments": 922, "total_fragments": 1656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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