{ "type": "genome", "identifier": "GCF_009936235.1", "organism": "Mycobacterium xenopi", "title": "Mycobacterium xenopi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mycobacteriology, National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009936235.1", "bioproject": "PRJNA224116", "biosample": "SAMD00197529", "wgs_master": "na", "refseq_category": "na", "taxid": "1789", "species_taxid": "1789", "organism_name": "Mycobacterium xenopi", "infraspecific_name": "strain=JCM 15661", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/25", "asm_name": "ASM993623v1", "asm_submitter": "Mycobacteriology, National Institute of Infectious Diseases", "gbrs_paired_asm": "GCA_009936235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/936/235/GCF_009936235.1_ASM993623v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4917655", "genome_size_ungapped": "4917655", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-14", "total_gene_count": "4775", "protein_coding_gene_count": "4267", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-25", "dateModified": "2019-12-25", "datePublished": "2019-12-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium xenopi" ], "sample_taxid": [ "1789" ], "sample_host_organism": [ "Xenopus laevis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.352 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4917655", "Number of Sequences": "1", "Longest Sequences (bp)": "4917655", "N50 (bp)": "4917655", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "4901", "Average Protein Length": "303.4", "Coding Ratio (%)": "90.7", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium xenopi", "strain": "strain=JCM 15661T", "accession": "GCA_009936235.1", "taxid": 1789, 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