{ "type": "genome", "identifier": "GCF_009938165.1", "organism": "Vibrio taketomensis", "title": "Vibrio taketomensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009938165.1", "bioproject": "PRJNA224116", "biosample": "SAMD00167058", "wgs_master": "na", "refseq_category": "na", "taxid": "2572923", "species_taxid": "2572923", "organism_name": "Vibrio taketomensis", "infraspecific_name": "strain=C4III282", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/06", "asm_name": "ASM993816v1", "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "gbrs_paired_asm": "GCA_009938165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/938/165/GCF_009938165.1_ASM993816v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4305214", "genome_size_ungapped": "4305214", "gc_percent": "44.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-14", "total_gene_count": "4093", "protein_coding_gene_count": "3639", "non_coding_gene_count": "152", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-06", "dateModified": "2020-01-06", "datePublished": "2020-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio taketomensis" ], "sample_taxid": [ "2572923" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Taketomi Island" ], "sample_host_location_id": [], "data_size": "1.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4305214", "Number of Sequences": "2", "Longest Sequences (bp)": "2963883", "N50 (bp)": "2963883", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.3", "Number of CDSs": "4141", "Average Protein Length": "285.9", "Coding Ratio (%)": "82.5", "Number of rRNAs": "36", "Number of tRNAs": "106", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", 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"organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 80.6457, "matched_fragments": 625, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 80.5678, "matched_fragments": 359, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 80.4452, "matched_fragments": 572, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", 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