{
    "type": "genome",
    "identifier": "GCF_009938205.1",
    "organism": "Vibrio panuliri",
    "title": "Vibrio panuliri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009938205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00167060",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1381081",
        "species_taxid": "1381081",
        "organism_name": "Vibrio panuliri",
        "infraspecific_name": "strain=JCM 19500",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/06",
        "asm_name": "ASM993820v1",
        "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
        "gbrs_paired_asm": "GCA_009938205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/938/205/GCF_009938205.1_ASM993820v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4855939",
        "genome_size_ungapped": "4855939",
        "gc_percent": "45.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009938205.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4446",
        "protein_coding_gene_count": "4259",
        "non_coding_gene_count": "149",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-06",
    "dateModified": "2020-01-06",
    "datePublished": "2020-01-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio panuliri"
        ],
        "sample_taxid": [
            "1381081"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India:Andaman Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.380 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4855939",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3237261",
        "N50 (bp)": "3237261",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "4309",
        "Average Protein Length": "322.9",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "34",
        "Number of tRNAs": "111",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Vibrio panuliri",
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                "relation_to_type": "type",
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                "total_fragments": 1617,
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            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Vibrio ponticus",
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                "accession": "GCA_009938225.1",
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                "species_taxid": 265668,
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            },
            {
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                "species_taxid": 2231649,
                "relation_to_type": "type",
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                "matched_fragments": 907,
                "total_fragments": 1617,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio marinisediminis",
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                "accession": "GCA_014050145.1",
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                "species_taxid": 2758441,
                "relation_to_type": "type",
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                "ani": 81.522,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
                "species_taxid": 691,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio scophthalmi",
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                "accession": "GCA_000222585.2",
                "taxid": 45658,
                "species_taxid": 45658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.641,
                "matched_fragments": 621,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio renipiscarius",
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                "accession": "GCA_000827885.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio rotiferianus",
                "strain": "strain=CAIM 577",
                "accession": "GCA_002741985.1",
                "taxid": 190895,
                "species_taxid": 190895,
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                "matched_fragments": 411,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio pomeroyi",
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                "accession": "GCA_024347595.1",
                "taxid": 198832,
                "species_taxid": 198832,
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                "ani": 80.1767,
                "matched_fragments": 370,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio europaeus",
                "strain": "strain=PP-638",
                "accession": "GCA_001695575.1",
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                "species_taxid": 300876,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio toranzoniae",
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                "accession": "GCA_024347655.1",
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                "validated": true,
                "ani": 79.9814,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_009938205.1",
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    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}