{ "type": "genome", "identifier": "GCF_009939005.1", "organism": "Sediminibacterium roseum", "title": "Sediminibacterium roseum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009939005.1", "bioproject": "PRJNA224116", "biosample": "SAMN13871800", "wgs_master": "JAACJS000000000.1", "refseq_category": "reference genome", "taxid": "1978412", "species_taxid": "1978412", "organism_name": "Sediminibacterium roseum", "infraspecific_name": "strain=SYL130", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/28", "asm_name": "ASM993900v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_009939005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/939/005/GCF_009939005.1_ASM993900v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4515697", "genome_size_ungapped": "4515497", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009939005.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3932", "protein_coding_gene_count": "3878", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-28", "dateModified": "2020-01-28", "datePublished": "2020-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Sediminibacterium roseum" ], "sample_taxid": [ "1978412" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deminuibacter soli", "strain": "strain=K23C18032701", "accession": "GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 76.4165, "matched_fragments": 135, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 76.3763, "matched_fragments": 67, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Foetidibacter luteolus", "strain": "strain=YG09", "accession": "GCA_009650435.1", "taxid": 2608880, "species_taxid": 2608880, "relation_to_type": "type", "validated": true, "ani": 76.2108, "matched_fragments": 88, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 76.163, "matched_fragments": 77, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 76.1573, "matched_fragments": 53, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 76.1312, "matched_fragments": 68, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": 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