{ "type": "genome", "identifier": "GCF_009939195.1", "organism": "Acinetobacter kanungonis", "title": "Acinetobacter kanungonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Life Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009939195.1", "bioproject": "PRJNA224116", "biosample": "SAMN13893433", "wgs_master": "JAACKC000000000.1", "refseq_category": "reference genome", "taxid": "2699469", "species_taxid": "2699469", "organism_name": "Acinetobacter kanungonis", "infraspecific_name": "strain=PS-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/28", "asm_name": "ASM993919v1", "asm_submitter": "Institute of Life Sciences", "gbrs_paired_asm": "GCA_009939195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/939/195/GCF_009939195.1_ASM993919v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3507903", "genome_size_ungapped": "3507903", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009939195.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3312", "protein_coding_gene_count": "3178", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-28", "dateModified": "2020-01-28", "datePublished": "2020-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter kanungonis" ], "sample_taxid": [ "2699469" ], "sample_host_organism": [ "puffer fish" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Mahanadi River, Cuttack" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3507903", "Number of Sequences": "20", "Longest Sequences (bp)": "939390", "N50 (bp)": "426365", "Gap Ratio (%)": "0.000684", "GCcontent (%)": "42.0", "Number of CDSs": "3254", "Average Protein Length": "310.8", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1160, "total_fragments": 1161, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 86.7093, "matched_fragments": 914, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 86.6335, "matched_fragments": 908, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 80.9494, "matched_fragments": 492, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.931, "matched_fragments": 542, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8957, "matched_fragments": 550, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 80.8432, "matched_fragments": 474, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 80.8299, "matched_fragments": 487, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7483, "matched_fragments": 533, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.3219, "matched_fragments": 541, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.3121, "matched_fragments": 458, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 80.2996, "matched_fragments": 467, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.2511, "matched_fragments": 482, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.2011, "matched_fragments": 476, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 79.8634, "matched_fragments": 432, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.7854, "matched_fragments": 441, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 79.7097, "matched_fragments": 432, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 79.6068, "matched_fragments": 394, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.4866, "matched_fragments": 435, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009939195.1", "gtdb_species": "s__Acinetobacter kanungonis", "ani": 100.0, "matched_fragments": 1160, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.15", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000400735.1", "gtdb_species": "s__Acinetobacter tandoii", "ani": 86.7093, "matched_fragments": 914, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003105055.1", "gtdb_species": "s__Acinetobacter sp003105055", "ani": 85.9333, "matched_fragments": 867, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331035.1", "gtdb_species": "s__Acinetobacter sp004331035", "ani": 85.8679, "matched_fragments": 883, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331175.1", "gtdb_species": "s__Acinetobacter sp004331175", "ani": 85.7624, "matched_fragments": 917, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331255.1", "gtdb_species": "s__Acinetobacter sp004331255", "ani": 85.6906, "matched_fragments": 909, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001758345.1", "gtdb_species": "s__Acinetobacter towneri_A", "ani": 80.7753, "matched_fragments": 470, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "kanungonis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }