{ "type": "genome", "identifier": "GCF_009939225.1", "organism": "Sediminibacterium soli", "title": "Sediminibacterium soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009939225.1", "bioproject": "PRJNA224116", "biosample": "SAMN13871783", "wgs_master": "JAACJR000000000.1", "refseq_category": "reference genome", "taxid": "2698829", "species_taxid": "2698829", "organism_name": "Sediminibacterium soli", "infraspecific_name": "strain=WSJ-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/28", "asm_name": "ASM993922v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_009939225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/939/225/GCF_009939225.1_ASM993922v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3876070", "genome_size_ungapped": "3875670", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009939225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3348", "protein_coding_gene_count": "3296", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-28", "dateModified": "2020-01-28", "datePublished": "2020-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Sediminibacterium soli" ], "sample_taxid": [ "2698829" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "1.094 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3876070", "Number of Sequences": "14", "Longest Sequences (bp)": "1755992", "N50 (bp)": "741827", "Gap Ratio (%)": "0.010320", "GCcontent (%)": "50.1", "Number of CDSs": "3283", "Average Protein Length": "350.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminibacterium soli", "strain": "strain=WSJ-3", "accession": "GCA_009939225.1", "taxid": 2698829, "species_taxid": 2698829, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1286, 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95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 76.6287, "matched_fragments": 71, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deminuibacter soli", "strain": "strain=K23C18032701", "accession": "GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 76.4848, "matched_fragments": 173, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parafilimonas terrae", "strain": "strain=DSM 28286", "accession": "GCA_900115755.1", "taxid": 1465490, "species_taxid": 1465490, "relation_to_type": "type", "validated": true, "ani": 76.4038, "matched_fragments": 63, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraflavitalea devenefica", "strain": "strain=X16", "accession": "GCA_011759375.1", "taxid": 2716334, "species_taxid": 2716334, "relation_to_type": "type", "validated": true, "ani": 76.2839, "matched_fragments": 119, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 76.235, "matched_fragments": 91, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella pedocola", "strain": "strain=JCM 31011", "accession": "GCA_021044425.1", "taxid": 1752077, "species_taxid": 1752077, "relation_to_type": "type", "validated": true, "ani": 76.1872, "matched_fragments": 75, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas lacunae", "strain": "strain=DSM 21054", "accession": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_019247775.1", "gtdb_species": "s__Sediminibacterium sp019247775", "ani": 78.1407, "matched_fragments": 434, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016183765.1", "gtdb_species": "s__Sediminibacterium sp016183765", "ani": 77.7548, "matched_fragments": 378, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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