{ "type": "genome", "identifier": "GCF_010093205.1", "organism": "Pseudoxanthomonas daejeonensis", "title": "Pseudoxanthomonas daejeonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010093205.1", "bioproject": "PRJNA224116", "biosample": "SAMN07809447", "wgs_master": "PDWN00000000.1", "refseq_category": "na", "taxid": "266062", "species_taxid": "266062", "organism_name": "Pseudoxanthomonas daejeonensis", "infraspecific_name": "strain=DSM 17801", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1009320v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_010093205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/205/GCF_010093205.1_ASM1009320v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3562529", "genome_size_ungapped": "3562529", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010093205.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3226", "protein_coding_gene_count": "3149", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas daejeonensis" ], "sample_taxid": [ "266062" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3562529", "Number of Sequences": "37", "Longest Sequences (bp)": "382093", "N50 (bp)": "227294", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "3172", "Average Protein Length": "336.0", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas daejeonensis", "strain": "strain=DSM 17801", "accession": "GCA_010093205.1", "taxid": 266062, "species_taxid": 266062, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 82.1465, "matched_fragments": 636, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 81.9965, "matched_fragments": 727, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 81.3872, "matched_fragments": 598, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { 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