{ "type": "genome", "identifier": "GCF_010093235.1", "organism": "Pseudoxanthomonas suwonensis", "title": "Pseudoxanthomonas suwonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010093235.1", "bioproject": "PRJNA224116", "biosample": "SAMN07809498", "wgs_master": "PDWP00000000.1", "refseq_category": "reference genome", "taxid": "314722", "species_taxid": "314722", "organism_name": "Pseudoxanthomonas suwonensis", "infraspecific_name": "strain=DSM 17175", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1009323v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_010093235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/093/235/GCF_010093235.1_ASM1009323v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3428061", "genome_size_ungapped": "3428061", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010093235.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3172", "protein_coding_gene_count": "3041", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas suwonensis" ], "sample_taxid": [ "314722" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3428061", "Number of Sequences": "66", "Longest Sequences (bp)": "194668", "N50 (bp)": "104754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "3124", "Average Protein Length": "326.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, 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85.7496, "matched_fragments": 840, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=JCM 13310", "accession": "GCA_001431595.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 83.0313, "matched_fragments": 667, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 83.0185, "matched_fragments": 703, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas sacchari", "strain": "strain=CFBP4641", "accession": "GCA_002940085.1", "taxid": 56458, "species_taxid": 56458, "relation_to_type": "suspected-type", "validated": true, "ani": 82.7351, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 81.0623, "matched_fragments": 672, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 80.9067, "matched_fragments": 512, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010093235.1", "gtdb_species": "s__Pseudoxanthomonas suwonensis", "ani": 100.0, "matched_fragments": 1106, "total_fragments": 1111, "gtdb_taxonomy": 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