{ "type": "genome", "identifier": "GCF_010119245.1", "organism": "Cyclobacterium salsum", "title": "Cyclobacterium salsum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang Institute of Ecology and Geography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010119245.1", "bioproject": "PRJNA224116", "biosample": "SAMN13254297", "wgs_master": "WNKG00000000.1", "refseq_category": "reference genome", "taxid": "2666329", "species_taxid": "2666329", "organism_name": "Cyclobacterium salsum", "infraspecific_name": "strain=SYSU L10167", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1011924v1", "asm_submitter": "Xinjiang Institute of Ecology and Geography", "gbrs_paired_asm": "GCA_010119245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/119/245/GCF_010119245.1_ASM1011924v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5870376", "genome_size_ungapped": "5870376", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010119245.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4743", "protein_coding_gene_count": "4681", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyclobacterium salsum" ], "sample_taxid": [ "2666329" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.668 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5870376", "Number of Sequences": "45", "Longest Sequences (bp)": "748031", "N50 (bp)": "436776", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.9", "Number of CDSs": "4638", "Average Protein Length": "367.5", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cyclobacterium salsum", "strain": "strain=SYSU L10167", "accession": "GCA_010119245.1", "taxid": 2666329, "species_taxid": 2666329, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1932, "total_fragments": 1934, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cyclobacterium roseum", "strain": "strain=SYSU L10180", "accession": "GCA_010119225.1", "taxid": 2666137, "species_taxid": 2666137, "relation_to_type": "type", "validated": true, "ani": 94.0728, "matched_fragments": 1627, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium jeungdonense", "strain": "strain=KCTC 23150", "accession": "GCA_010994275.1", "taxid": 708087, "species_taxid": 708087, "relation_to_type": "type", "validated": true, "ani": 86.2517, "matched_fragments": 1518, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium plantarum", "strain": "strain=GBPx2", "accession": "GCA_011290685.1", "taxid": 2716263, "species_taxid": 2716263, "relation_to_type": "type", "validated": true, "ani": 80.4419, "matched_fragments": 750, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium xiamenense", "strain": "strain=CGMCC 1.12432", "accession": "GCA_009467825.1", "taxid": 1297121, "species_taxid": 1297121, "relation_to_type": "type", "validated": true, "ani": 80.3816, "matched_fragments": 840, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium lianum", "strain": "strain=CGMCC 1.6102", "accession": "GCA_900143075.1", "taxid": 388280, "species_taxid": 388280, "relation_to_type": "type", "validated": true, "ani": 78.7774, "matched_fragments": 588, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium marinum", "strain": "strain=DSM 745", "accession": "GCA_000222485.1", "taxid": 104, "species_taxid": 104, "relation_to_type": "type", "validated": true, "ani": 77.385, "matched_fragments": 224, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia lonarensis", "strain": "strain=LW9", "accession": "GCA_000298295.1", "taxid": 645110, "species_taxid": 645110, "relation_to_type": "type", "validated": true, "ani": 76.4721, "matched_fragments": 62, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola salinicaeni", "strain": "strain=P51", "accession": "GCA_014280965.1", "taxid": 2762757, "species_taxid": 2762757, "relation_to_type": "type", "validated": true, "ani": 76.2786, "matched_fragments": 65, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010119245.1", "gtdb_species": "s__Cyclobacterium sp010119245", "ani": 100.0, "matched_fragments": 1932, "total_fragments": 1934, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010119225.1", "gtdb_species": "s__Cyclobacterium sp010119225", "ani": 94.0642, "matched_fragments": 1628, "total_fragments": 1934, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010994275.1", "gtdb_species": "s__Cyclobacterium jeungdonense", "ani": 86.2414, "matched_fragments": 1520, "total_fragments": 1934, "gtdb_taxonomy": 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"coding_genes": 4875.833, "rRNA16S_genes": 3.5, "tRNA_genes": 39.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Cyclobacterium", "salsum" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }