{ "type": "genome", "identifier": "GCF_010119385.1", "organism": "Nesterenkonia haasae", "title": "Nesterenkonia haasae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Heilongjiang Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010119385.1", "bioproject": "PRJNA224116", "biosample": "SAMN11998086", "wgs_master": "VFIE00000000.1", "refseq_category": "reference genome", "taxid": "2587813", "species_taxid": "2587813", "organism_name": "Nesterenkonia haasae", "infraspecific_name": "strain=Hz 6-5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1011938v1", "asm_submitter": "Heilongjiang Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_010119385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/119/385/GCF_010119385.1_ASM1011938v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3434649", "genome_size_ungapped": "3433063", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010119385.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3286", "protein_coding_gene_count": "3185", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia haasae" ], "sample_taxid": [ "2587813" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Heilongjiang" ], "sample_host_location_id": [], "data_size": "0.974 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3434649", "Number of Sequences": "51", "Longest Sequences (bp)": "694844", "N50 (bp)": "419464", "Gap Ratio (%)": "0.046176", "GCcontent (%)": "60.8", "Number of CDSs": "3196", "Average Protein Length": "322.9", "Coding Ratio (%)": "90.2", "Number of rRNAs": "5", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia haasae", "strain": "strain=Hz 6-5", "accession": "GCA_010119385.1", "taxid": 2587813, "species_taxid": 2587813, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1124, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia salmonea", "strain": "strain=GY074", "accession": "GCA_005771525.1", "taxid": 1804987, "species_taxid": 1804987, "relation_to_type": "type", "validated": true, "ani": 83.7559, "matched_fragments": 708, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia natronophila", "strain": "strain=M8", "accession": "GCA_003595215.1", "taxid": 2174932, "species_taxid": 2174932, "relation_to_type": "type", "validated": true, "ani": 79.894, "matched_fragments": 464, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sphaerica", "strain": "strain=GY239", "accession": "GCA_005771565.1", "taxid": 1804988, "species_taxid": 1804988, "relation_to_type": "type", "validated": true, "ani": 79.4161, "matched_fragments": 438, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 78.4495, "matched_fragments": 306, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia ebinurensis", "strain": "strain=MD2", "accession": "GCA_008711175.1", "taxid": 2608252, "species_taxid": 2608252, "relation_to_type": "type", "validated": true, "ani": 78.2341, "matched_fragments": 325, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia muleiensis", "strain": "strain=RB2", "accession": "GCA_003600155.1", "taxid": 2282648, "species_taxid": 2282648, "relation_to_type": "type", "validated": true, "ani": 78.2252, "matched_fragments": 336, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 77.5528, "matched_fragments": 191, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 77.289, "matched_fragments": 178, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus flavus", "strain": "strain=DSM 19079", "accession": "GCA_022348285.1", "taxid": 384602, "species_taxid": 384602, "relation_to_type": "type", "validated": true, "ani": 76.6654, "matched_fragments": 65, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter cryotolerans", "strain": "strain=DSM 22826", "accession": "GCA_014190875.1", "taxid": 670079, "species_taxid": 670079, "relation_to_type": "type", "validated": true, "ani": 76.5799, "matched_fragments": 65, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4878, "matched_fragments": 60, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 76.3829, "matched_fragments": 70, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010119385.1", "gtdb_species": "s__Nesterenkonia haasae", "ani": 100.0, "matched_fragments": 1124, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_005771525.1", "gtdb_species": "s__Nesterenkonia salmonea", "ani": 83.7558, "matched_fragments": 709, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003595215.1", "gtdb_species": "s__Nesterenkonia natronophila", "ani": 79.9035, "matched_fragments": 464, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005771565.1", "gtdb_species": "s__Nesterenkonia sphaerica", "ani": 79.4052, "matched_fragments": 439, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009758175.1", "gtdb_species": "s__Nesterenkonia alkaliphila", "ani": 78.3601, "matched_fragments": 311, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008711175.1", "gtdb_species": "s__Nesterenkonia sp008711175", "ani": 78.2569, "matched_fragments": 323, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003600155.1", "gtdb_species": "s__Nesterenkonia muleiensis", "ani": 78.2103, "matched_fragments": 338, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014195445.1", "gtdb_species": "s__Nesterenkonia koreensis", "ani": 77.5505, "matched_fragments": 192, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001302565.1", "gtdb_species": "s__Glutamicibacter halophytocola", "ani": 76.5467, "matched_fragments": 54, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006094275.1", "gtdb_species": "s__Glutamicibacter creatinolyticus", "ani": 76.3723, "matched_fragments": 75, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001484605.1", "gtdb_species": "s__Pseudarthrobacter sulfonivorans_A", "ani": 76.0708, "matched_fragments": 75, "total_fragments": 1126, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.221, "cell_length": 0.038, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 33.785, "optimum_ph": 8.642, "genome_size": 2845759.25, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.222, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.555, "coccus_cell_shape": 0.444, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Nesterenkonia", "haasae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }