{ "type": "genome", "identifier": "GCF_010119615.1", "organism": "Pseudoxanthomonas gei", "title": "Pseudoxanthomonas gei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010119615.1", "bioproject": "PRJNA224116", "biosample": "SAMN09652603", "wgs_master": "QOVG00000000.1", "refseq_category": "reference genome", "taxid": "1383030", "species_taxid": "1383030", "organism_name": "Pseudoxanthomonas gei", "infraspecific_name": "strain=KCTC 32298", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1011961v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_010119615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/119/615/GCF_010119615.1_ASM1011961v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3430976", "genome_size_ungapped": "3430976", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010119615.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3191", "protein_coding_gene_count": "3103", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas gei" ], "sample_taxid": [ "1383030" ], "sample_host_organism": [ "Geum aleppicum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3430976", "Number of Sequences": "50", "Longest Sequences (bp)": "644628", "N50 (bp)": "332530", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "3123", "Average Protein Length": "325.2", "Coding Ratio (%)": "88.8", "Number of rRNAs": "4", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas gei", "strain": "strain=KCTC 32298", "accession": "GCA_010119615.1", "taxid": 1383030, "species_taxid": 1383030, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1126, 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