{ "type": "genome", "identifier": "GCF_010211745.1", "organism": "Pseudoxanthomonas kalamensis DSM 18571", "title": "Pseudoxanthomonas kalamensis DSM 18571", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010211745.1", "bioproject": "PRJNA224116", "biosample": "SAMN07809541", "wgs_master": "PDWQ00000000.1", "refseq_category": "reference genome", "taxid": "1123030", "species_taxid": "289483", "organism_name": "Pseudoxanthomonas kalamensis DSM 18571", "infraspecific_name": "strain=DSM 18571", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/03", "asm_name": "ASM1021174v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_010211745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/211/745/GCF_010211745.1_ASM1021174v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3031349", "genome_size_ungapped": "3031349", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "160", "contig_count": "160", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010211745.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2910", "protein_coding_gene_count": "2742", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-03", "dateModified": "2020-02-03", "datePublished": "2020-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas kalamensis DSM 18571" ], "sample_taxid": [ "1123030" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3031349", "Number of Sequences": "160", "Longest Sequences (bp)": "877852", "N50 (bp)": "478688", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "2715", "Average Protein Length": "332.7", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas kalamensis", "strain": "strain=DSM 18571", "accession": "GCA_010211745.1", "taxid": 289483, "species_taxid": 289483, 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80.0393, "matched_fragments": 444, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 79.906, "matched_fragments": 431, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 79.6484, "matched_fragments": 434, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010211745.1", "gtdb_species": "s__Pseudoxanthomonas_A kalamensis", "ani": 100.0, "matched_fragments": 972, "total_fragments": 972, 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