{
    "type": "genome",
    "identifier": "GCF_010365285.1",
    "organism": "Paenibacillus rhizovicinus",
    "title": "Paenibacillus rhizovicinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010365285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13972363",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2704463",
        "species_taxid": "2704463",
        "organism_name": "Paenibacillus rhizovicinus",
        "infraspecific_name": "strain=14171R-81",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/09",
        "asm_name": "ASM1036528v1",
        "asm_submitter": "National Institute of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_010365285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/365/285/GCF_010365285.1_ASM1036528v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7524325",
        "genome_size_ungapped": "7524325",
        "gc_percent": "54.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010365285.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "6818",
        "protein_coding_gene_count": "6585",
        "non_coding_gene_count": "169",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-09",
    "dateModified": "2020-02-09",
    "datePublished": "2020-02-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus rhizovicinus"
        ],
        "sample_taxid": [
            "2704463"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Wanju"
        ],
        "sample_host_location_id": [],
        "data_size": "2.121 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7524325",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "7049254",
        "N50 (bp)": "7049254",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.6",
        "Number of CDSs": "6795",
        "Average Protein Length": "318.2",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "39",
        "Number of tRNAs": "126",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus rhizovicinus",
                "strain": "strain=14171R-81",
                "accession": "GCA_010365285.1",
                "taxid": 2704463,
                "species_taxid": 2704463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2505,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus lycopersici",
                "strain": "strain=12200R-189",
                "accession": "GCA_010119935.1",
                "taxid": 2704462,
                "species_taxid": 2704462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1393,
                "matched_fragments": 1517,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus sacheonensis",
                "strain": "strain=DSM 23054",
                "accession": "GCA_016908255.1",
                "taxid": 742054,
                "species_taxid": 742054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5875,
                "matched_fragments": 1296,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus sacheonensis",
                "strain": "strain=DSM 23054",
                "accession": "GCA_009909195.1",
                "taxid": 742054,
                "species_taxid": 742054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5673,
                "matched_fragments": 1307,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus glycinis",
                "strain": "strain=T1",
                "accession": "GCA_009909185.1",
                "taxid": 2697035,
                "species_taxid": 2697035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1069,
                "matched_fragments": 1224,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus artemisiicola",
                "strain": "strain=MWE-103",
                "accession": "GCA_017652985.1",
                "taxid": 1172618,
                "species_taxid": 1172618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2176,
                "matched_fragments": 1156,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus albus",
                "strain": "strain=18JY67-1",
                "accession": "GCA_003952225.1",
                "taxid": 2495582,
                "species_taxid": 2495582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.556,
                "matched_fragments": 718,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus taihuensis",
                "strain": "strain=CGMCC 1.10966",
                "accession": "GCA_003386535.1",
                "taxid": 1156355,
                "species_taxid": 1156355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3416,
                "matched_fragments": 757,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus lignilyticus",
                "strain": "strain=DLE-14",
                "accession": "GCA_017942085.1",
                "taxid": 1172615,
                "species_taxid": 1172615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3067,
                "matched_fragments": 692,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus mendelii",
                "strain": "strain=C/2",
                "accession": "GCA_024498075.1",
                "taxid": 206163,
                "species_taxid": 206163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.347,
                "matched_fragments": 328,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus rhizophilus",
                "strain": "strain=7197",
                "accession": "GCA_003854965.1",
                "taxid": 1850366,
                "species_taxid": 1850366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7218,
                "matched_fragments": 130,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus doosanensis",
                "strain": "strain=CAU 1055",
                "accession": "GCA_025060755.1",
                "taxid": 1229154,
                "species_taxid": 1229154,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4513,
                "matched_fragments": 228,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010365285.1",
                "gtdb_species": "s__Paenibacillus_Z rhizovicinus",
                "ani": 100.0,
                "matched_fragments": 2503,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_010119935.1",
                "gtdb_species": "s__Paenibacillus_Z lycopersici",
                "ani": 84.1418,
                "matched_fragments": 1513,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009909195.1",
                "gtdb_species": "s__Paenibacillus_Z sacheonensis",
                "ani": 82.5629,
                "matched_fragments": 1307,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009909185.1",
                "gtdb_species": "s__Paenibacillus_Z glycinis",
                "ani": 82.1175,
                "matched_fragments": 1222,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113915.1",
                "gtdb_species": "s__Paenibacillus_Z sp900113915",
                "ani": 81.0725,
                "matched_fragments": 1199,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.39",
                "min_intra_species_ani": "96.39",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003268025.1",
                "gtdb_species": "s__Paenibacillus_Z montanisoli",
                "ani": 79.4188,
                "matched_fragments": 749,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003386535.1",
                "gtdb_species": "s__Paenibacillus_Z taihuensis",
                "ani": 79.3444,
                "matched_fragments": 755,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110075.1",
                "gtdb_species": "s__Paenibacillus_Z sp900110075",
                "ani": 79.1466,
                "matched_fragments": 628,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
        "optimum_tmp": 31.323,
        "optimum_ph": 7.238,
        "genome_size": 6197949.921,
        "gc_content": 50.283,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
        "anaerobic_respiration": 0.007,
        "aerobic_respiration": 0.645,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "rhizovicinus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}