{ "type": "genome", "identifier": "GCF_010435915.1", "organism": "Spirosoma terrae", "title": "Spirosoma terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Justus-Liebig University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010435915.1", "bioproject": "PRJNA224116", "biosample": "SAMN13335992", "wgs_master": "JAAFZH000000000.1", "refseq_category": "reference genome", "taxid": "1968276", "species_taxid": "1968276", "organism_name": "Spirosoma terrae", "infraspecific_name": "strain=KCTC 52035", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/11", "asm_name": "ASM1043591v1", "asm_submitter": "Justus-Liebig University", "gbrs_paired_asm": "GCA_010435915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/435/915/GCF_010435915.1_ASM1043591v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7533689", "genome_size_ungapped": "7533689", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010435915.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6249", "protein_coding_gene_count": "6173", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-11", "dateModified": "2020-02-11", "datePublished": "2020-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma terrae" ], "sample_taxid": [ "1968276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.148 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7533689", "Number of Sequences": "62", "Longest Sequences (bp)": "1161613", "N50 (bp)": "365996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.4", "Number of CDSs": "6109", "Average Protein Length": "359.6", "Coding Ratio (%)": "87.5", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma terrae", "strain": "strain=KCTC 52035", "accession": "GCA_010435915.1", "taxid": 1968276, "species_taxid": 1968276, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2482, "total_fragments": 2489, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.8847, "matched_fragments": 703, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.7871, "matched_fragments": 733, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.6079, "matched_fragments": 614, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.3758, "matched_fragments": 490, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.3088, "matched_fragments": 493, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.2725, "matched_fragments": 488, "total_fragments": 2489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", 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