{ "type": "genome", "identifier": "GCF_010499455.1", "organism": "Ideonella livida", "title": "Ideonella livida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010499455.1", "bioproject": "PRJNA224116", "biosample": "SAMN14047992", "wgs_master": "JAAGOH000000000.1", "refseq_category": "reference genome", "taxid": "2707176", "species_taxid": "2707176", "organism_name": "Ideonella livida", "infraspecific_name": "strain=TBM-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/12", "asm_name": "ASM1049945v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_010499455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/499/455/GCF_010499455.1_ASM1049945v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5255637", "genome_size_ungapped": "5255637", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010499455.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4650", "protein_coding_gene_count": "4526", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-12", "dateModified": "2020-02-12", "datePublished": "2020-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella livida" ], "sample_taxid": [ "2707176" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.414 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5255637", "Number of Sequences": "104", "Longest Sequences (bp)": "421226", "N50 (bp)": "150655", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.0", "Number of CDSs": "4505", "Average Protein Length": "346.1", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": 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"below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 79.6844, "matched_fragments": 774, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 79.6679, "matched_fragments": 774, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 79.4912, "matched_fragments": 792, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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