{ "type": "genome", "identifier": "GCF_010509075.1", "organism": "Collinsella aerofaciens ATCC 25986", "title": "Collinsella aerofaciens ATCC 25986", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010509075.1", "bioproject": "PRJNA224116", "biosample": "SAMN13925608", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "411903", "species_taxid": "74426", "organism_name": "Collinsella aerofaciens ATCC 25986", "infraspecific_name": "strain=JCM 10188", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/13", "asm_name": "ASM1050907v1", "asm_submitter": "National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute", "gbrs_paired_asm": "GCA_010509075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/509/075/GCF_010509075.1_ASM1050907v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2455328", "genome_size_ungapped": "2455328", "gc_percent": "60.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010509075.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "2197", "protein_coding_gene_count": "2110", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-13", "dateModified": "2020-02-13", "datePublished": "2020-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Collinsella aerofaciens ATCC 25986" ], "sample_taxid": [ "411903" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "na" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2455328", "Number of Sequences": "3", "Longest Sequences (bp)": "2428218", "N50 (bp)": "2428218", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "2141", "Average Protein Length": "328.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "15", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 814, "total_fragments": 817, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 99.9906, "matched_fragments": 811, "total_fragments": 817, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 99.9682, "matched_fragments": 797, "total_fragments": 817, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 80.7418, "matched_fragments": 251, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 80.6879, "matched_fragments": 283, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 80.4416, "matched_fragments": 280, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, 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