{ "type": "genome", "identifier": "GCF_010550675.1", "organism": "Phytoactinopolyspora halotolerans", "title": "Phytoactinopolyspora halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hebei North University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010550675.1", "bioproject": "PRJNA224116", "biosample": "SAMN13979627", "wgs_master": "JAAGOA000000000.1", "refseq_category": "reference genome", "taxid": "1981512", "species_taxid": "1981512", "organism_name": "Phytoactinopolyspora halotolerans", "infraspecific_name": "strain=CCTCC AB 2017055", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/13", "asm_name": "ASM1055067v1", "asm_submitter": "Hebei North University", "gbrs_paired_asm": "GCA_010550675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/550/675/GCF_010550675.1_ASM1055067v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7303666", "genome_size_ungapped": "7303576", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010550675.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "6462", "protein_coding_gene_count": "6318", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-13", "dateModified": "2020-02-13", "datePublished": "2020-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Phytoactinopolyspora halotolerans" ], "sample_taxid": [ "1981512" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7303666", "Number of Sequences": "65", "Longest Sequences (bp)": "519333", "N50 (bp)": "229369", "Gap Ratio (%)": "0.001232", "GCcontent (%)": "68.1", "Number of CDSs": "6450", "Average Protein Length": "336.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phytoactinopolyspora halotolerans", "strain": "strain=CCTCC AB 2017055", "accession": "GCA_010550675.1", "taxid": 1981512, "species_taxid": 1981512, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2400, "total_fragments": 2404, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phytoactinopolyspora endophytica", "strain": "strain=EGI 60009", "accession": "GCA_004138495.1", "taxid": 1642495, "species_taxid": 1642495, "relation_to_type": "type", "validated": true, "ani": 81.4236, "matched_fragments": 1450, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytoactinopolyspora alkaliphila", "strain": "strain=CGMCC 4.7225", "accession": "GCA_010550695.1", "taxid": 1783498, "species_taxid": 1783498, "relation_to_type": "type", "validated": true, "ani": 78.8471, "matched_fragments": 797, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloactinopolyspora alba", "strain": "strain=YIM 93246", "accession": "GCA_004138525.1", "taxid": 648780, "species_taxid": 648780, "relation_to_type": "type", "validated": true, "ani": 78.1365, "matched_fragments": 673, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloactinopolyspora alba", "strain": "strain=DSM 45211", "accession": "GCA_003014555.1", "taxid": 648780, "species_taxid": 648780, "relation_to_type": "type", "validated": true, "ani": 78.132, "matched_fragments": 678, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 78.1294, "matched_fragments": 746, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella gansuensis", "strain": "strain=DSM 44835", "accession": "GCA_000515395.1", "taxid": 281473, "species_taxid": 281473, "relation_to_type": "type", "validated": true, "ani": 78.1178, "matched_fragments": 676, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytoactinopolyspora limicola", "strain": "strain=HAJB-30", "accession": "GCA_011320225.1", "taxid": 2715536, "species_taxid": 2715536, "relation_to_type": "type", "validated": true, "ani": 78.083, "matched_fragments": 654, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 77.9799, "matched_fragments": 692, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 77.9272, "matched_fragments": 806, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 77.8112, "matched_fragments": 812, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 77.8058, "matched_fragments": 828, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola chiayiensis", "strain": "strain=KCTC 19740", "accession": "GCA_013149805.1", "taxid": 579446, "species_taxid": 579446, "relation_to_type": "type", "validated": true, "ani": 76.1597, "matched_fragments": 289, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.0924, "matched_fragments": 262, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 76.0554, "matched_fragments": 258, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 76.0235, "matched_fragments": 214, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 76.0098, "matched_fragments": 503, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 76.0043, "matched_fragments": 486, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora pleiomorpha", "strain": "strain=NBRC 16267", "accession": "GCA_009687885.1", "taxid": 90975, "species_taxid": 90975, "relation_to_type": "type", "validated": true, "ani": 75.9589, "matched_fragments": 408, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium insubricum", "strain": "strain=JCM 16366", "accession": "GCA_010731615.1", "taxid": 444597, "species_taxid": 444597, "relation_to_type": "type", "validated": true, "ani": 75.7379, "matched_fragments": 198, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 75.7254, "matched_fragments": 424, "total_fragments": 2404, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010550675.1", "gtdb_species": "s__Phytoactinopolyspora halotolerans", "ani": 100.0, "matched_fragments": 2400, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Phytoactinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010550695.1", "gtdb_species": "s__Phytoactinopolyspora alkaliphila", "ani": 78.8354, "matched_fragments": 799, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Phytoactinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010122465.1", "gtdb_species": "s__Phytoactinopolyspora mesophila", "ani": 78.3111, "matched_fragments": 772, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Phytoactinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003014555.1", "gtdb_species": "s__Haloactinopolyspora alba", "ani": 78.1514, "matched_fragments": 674, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Haloactinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003236295.1", "gtdb_species": "s__Jiangella anatolica", "ani": 78.1282, "matched_fragments": 805, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003579925.1", "gtdb_species": "s__Jiangella rhizosphaerae", "ani": 78.1271, "matched_fragments": 747, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349065.1", "gtdb_species": "s__Jiangella asiatica", "ani": 78.1135, "matched_fragments": 725, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000515395.1", "gtdb_species": "s__Jiangella gansuensis", "ani": 78.0939, "matched_fragments": 680, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011320225.1", "gtdb_species": "s__Phytoactinopolyspora limicola", "ani": 78.0865, "matched_fragments": 654, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Phytoactinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348545.1", "gtdb_species": "s__Jiangella ureilytica", "ani": 77.9931, "matched_fragments": 688, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105925.1", "gtdb_species": "s__Jiangella alkaliphila", "ani": 77.9022, "matched_fragments": 811, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900106035.1", "gtdb_species": "s__Jiangella alba", "ani": 77.7907, "matched_fragments": 817, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001270745.1", "gtdb_species": "s__Jiangella muralis", "ani": 77.742, "matched_fragments": 770, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204975.1", "gtdb_species": "s__Jiangella mangrovi", "ani": 77.6867, "matched_fragments": 762, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149805.1", "gtdb_species": "s__Isoptericola chiayiensis", "ani": 76.1545, "matched_fragments": 290, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004216535.1", "gtdb_species": "s__Xylanimonas ulmi", "ani": 76.0071, "matched_fragments": 229, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010731615.1", "gtdb_species": "s__Mycobacterium insubricum", "ani": 75.7379, "matched_fragments": 198, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001722335.1", "gtdb_species": "s__Mycobacterium flavescens_A", "ani": 75.6027, "matched_fragments": 262, "total_fragments": 2404, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Phytoactinopolyspora", "halotolerans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }