{ "type": "genome", "identifier": "GCF_010560025.1", "organism": "Verrucosispora sioxanthis", "title": "Verrucosispora sioxanthis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of South Florida", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010560025.1", "bioproject": "PRJNA224116", "biosample": "SAMN10666570", "wgs_master": "SAIY00000000.1", "refseq_category": "reference genome", "taxid": "2499994", "species_taxid": "2499994", "organism_name": "Verrucosispora sioxanthis", "infraspecific_name": "strain=CWR15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/13", "asm_name": "ASM1056002v1", "asm_submitter": "University of South Florida", "gbrs_paired_asm": "GCA_010560025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/560/025/GCF_010560025.1_ASM1056002v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6367494", "genome_size_ungapped": "6367494", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010560025.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5980", "protein_coding_gene_count": "5479", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-13", "dateModified": "2020-02-13", "datePublished": "2020-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucosispora sioxanthis" ], "sample_taxid": [ "2499994" ], "sample_host_organism": [ "marine sponge" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Clearwater Reef, FL" ], "sample_host_location_id": [], "data_size": "1.702 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6367494", "Number of Sequences": "35", "Longest Sequences (bp)": "1099403", "N50 (bp)": "666828", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "6020", "Average Protein Length": "310.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora tarapacensis", "strain": "strain=Llam7", "accession": "GCA_019697375.1", "taxid": 2835305, "species_taxid": 2835305, "relation_to_type": "type", "validated": true, "ani": 88.202, 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"total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craterilacus", "strain": "strain=NA12", "accession": "GCA_003236315.1", "taxid": 1655439, "species_taxid": 1655439, "relation_to_type": "type", "validated": true, "ani": 87.3327, "matched_fragments": 1285, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora radicis", "strain": "strain=AZ1-13", "accession": "GCA_003583405.1", "taxid": 1894971, "species_taxid": 1894971, "relation_to_type": "type", "validated": true, "ani": 86.6441, "matched_fragments": 1385, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora zingiberis", "strain": "strain=PLAI 1-1", "accession": "GCA_004331455.1", "taxid": 2053011, "species_taxid": 2053011, "relation_to_type": "type", "validated": true, "ani": 86.6273, "matched_fragments": 1431, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_003419945.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 86.1981, "matched_fragments": 1328, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 86.065, "matched_fragments": 1491, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 86.0445, "matched_fragments": 1493, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { 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