{ "type": "genome", "identifier": "GCF_010614725.1", "organism": "Flavobacterium ajazii", "title": "Flavobacterium ajazii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010614725.1", "bioproject": "PRJNA224116", "biosample": "SAMN13902114", "wgs_master": "JAAEHL000000000.1", "refseq_category": "reference genome", "taxid": "2692318", "species_taxid": "2692318", "organism_name": "Flavobacterium ajazii", "infraspecific_name": "strain=SSM4.2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/14", "asm_name": "ASM1061472v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_010614725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/725/GCF_010614725.1_ASM1061472v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5754623", "genome_size_ungapped": "5754623", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010614725.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4764", "protein_coding_gene_count": "4673", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-14", "dateModified": "2020-02-14", "datePublished": "2020-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium ajazii" ], "sample_taxid": [ "2692318" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Gouqi Island, Zhejiang Province" ], "sample_host_location_id": [], "data_size": "1.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5754623", "Number of Sequences": "33", "Longest Sequences (bp)": "706682", "N50 (bp)": "366838", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "4661", "Average Protein Length": "359.4", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium ajazii", "strain": "strain=SSM4.2", "accession": "GCA_010614725.1", "taxid": 2692318, "species_taxid": 2692318, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1901, "total_fragments": 1903, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium fluviatile", "strain": "strain=TAPY14", "accession": "GCA_010645065.1", "taxid": 1862387, "species_taxid": 1862387, "relation_to_type": "type", "validated": true, "ani": 85.5242, "matched_fragments": 1054, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 85.0996, "matched_fragments": 1265, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 85.0897, "matched_fragments": 1121, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 84.6217, "matched_fragments": 1293, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 82.522, "matched_fragments": 929, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 82.5104, "matched_fragments": 941, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 82.4322, "matched_fragments": 967, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 82.3675, "matched_fragments": 915, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=DSM 29982", "accession": "GCA_900182675.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 82.3254, "matched_fragments": 892, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tistrianum", "strain": "strain=GB 56.1", "accession": "GCA_003254545.1", "taxid": 1685414, "species_taxid": 1685414, "relation_to_type": "type", "validated": true, "ani": 82.2951, "matched_fragments": 860, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=UW101; ATCC 17061", "accession": "GCA_000016645.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 82.2724, "matched_fragments": 979, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 82.2719, "matched_fragments": 900, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 82.2682, "matched_fragments": 973, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panici", "strain": "", "accession": "GCA_903819335.1", "taxid": 2654843, "species_taxid": 2654843, "relation_to_type": "type", "validated": true, "ani": 82.2351, "matched_fragments": 986, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 82.2215, "matched_fragments": 914, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 82.2158, "matched_fragments": 989, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 82.1668, "matched_fragments": 894, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 82.1478, "matched_fragments": 882, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 82.1269, "matched_fragments": 928, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.9785, "matched_fragments": 967, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium quisquiliarum", "strain": "strain=EA-12", "accession": "GCA_019308285.1", "taxid": 1834436, "species_taxid": 1834436, "relation_to_type": "type", "validated": true, "ani": 81.9732, "matched_fragments": 1000, "total_fragments": 1903, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviale", "strain": "strain=HYN0086", "accession": "GCA_003312915.1", "taxid": 2249356, "species_taxid": 2249356, "relation_to_type": "type", "validated": true, "ani": 81.9444, "matched_fragments": 893, 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"gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "ajazii" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }