{ "tc_result": [ { "organism_name": "Pseudomonas antarctica", "strain": "strain=CMS 35", "accession": "GCA_010634845.1", "taxid": 219572, "species_taxid": 219572, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2117, "total_fragments": 2120, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas antarctica", "strain": "", "accession": "GCA_900624995.1", "taxid": 219572, "species_taxid": 219572, "relation_to_type": "type", "validated": true, "ani": 99.8969, "matched_fragments": 1922, "total_fragments": 2120, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 89.5577, "matched_fragments": 1684, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NCTC10038", "accession": "GCA_900475215.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4988, "matched_fragments": 1742, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_007858165.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4639, "matched_fragments": 1722, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_003700725.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1538, "matched_fragments": 1491, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1137, "matched_fragments": 1529, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_001645105.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0918, "matched_fragments": 1544, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.9496, "matched_fragments": 1640, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.8523, "matched_fragments": 1602, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas palleroniana", "strain": "strain=LMG 23076", "accession": "GCA_003031675.1", "taxid": 191390, "species_taxid": 191390, "relation_to_type": "type", "validated": true, "ani": 87.4434, "matched_fragments": 1565, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yamanorum", "strain": "strain=LMG 27247", "accession": "GCA_900105735.1", "taxid": 515393, "species_taxid": 515393, "relation_to_type": "suspected-type", "validated": true, "ani": 86.7098, "matched_fragments": 1608, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.8784, "matched_fragments": 1463, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas proteolytica", "strain": "strain=DSM 15321", "accession": "GCA_007858275.1", "taxid": 219574, "species_taxid": 219574, "relation_to_type": "type", "validated": true, "ani": 85.857, "matched_fragments": 1405, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 85.0803, "matched_fragments": 1280, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas defluvii", "strain": "strain=WCHP16", "accession": "GCA_001695625.1", "taxid": 1876757, "species_taxid": 1876757, "relation_to_type": "type", "validated": true, "ani": 80.5499, "matched_fragments": 717, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.106, "matched_fragments": 76, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 75.7584, "matched_fragments": 83, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 75.7503, "matched_fragments": 97, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900624995.1", "gtdb_species": "s__Pseudomonas_E antarctica", "ani": 99.8969, "matched_fragments": 1922, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_009707325.1", "gtdb_species": "s__Pseudomonas_E sp002263605", "ani": 93.1354, "matched_fragments": 1670, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009834565.1", "gtdb_species": "s__Pseudomonas_E sp009834565", "ani": 90.8002, "matched_fragments": 1775, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003852315.1", "gtdb_species": "s__Pseudomonas_E sp003014915", "ani": 90.1506, "matched_fragments": 1745, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_001647715.1", "gtdb_species": "s__Pseudomonas_E antarctica_A", "ani": 89.9191, "matched_fragments": 1754, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900215245.1", "gtdb_species": "s__Pseudomonas_E fluorescens", "ani": 89.5053, "matched_fragments": 1741, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.92", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_005938045.2", "gtdb_species": "s__Pseudomonas_E sp005938045", "ani": 88.9929, "matched_fragments": 1710, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.18", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001050345.1", "gtdb_species": "s__Pseudomonas_E fildesensis", "ani": 88.3571, "matched_fragments": 1575, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003612935.1", "gtdb_species": "s__Pseudomonas_E sp003013355", "ani": 88.1792, "matched_fragments": 1655, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_007858185.1", "gtdb_species": "s__Pseudomonas_E grimontii", "ani": 88.1126, "matched_fragments": 1557, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001645105.1", "gtdb_species": "s__Pseudomonas_E marginalis_B", "ani": 88.1096, "matched_fragments": 1541, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_009866765.1", "gtdb_species": "s__Pseudomonas_E sp009866765", "ani": 87.694, "matched_fragments": 1545, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014230465.1", "gtdb_species": "s__Pseudomonas_E cremoris", "ani": 87.6174, "matched_fragments": 1546, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003031675.1", "gtdb_species": "s__Pseudomonas_E palleroniana", "ani": 87.4584, "matched_fragments": 1563, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_013386765.1", "gtdb_species": "s__Pseudomonas_E yamanorum_A", "ani": 87.0105, "matched_fragments": 1571, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002204795.1", "gtdb_species": "s__Pseudomonas_E sp002204795", "ani": 86.8831, "matched_fragments": 1543, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002251635.1", "gtdb_species": "s__Pseudomonas_E mandelii_B", "ani": 86.2927, "matched_fragments": 1230, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105155.1", "gtdb_species": "s__Pseudomonas_E prosekii", "ani": 83.1799, "matched_fragments": 1232, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "96.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003331055.1", "gtdb_species": "s__Pseudomonas_E sp003331055", "ani": 80.9334, "matched_fragments": 901, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000282535.1", "gtdb_species": "s__Pseudomonas_E sp000282535", "ani": 80.8699, "matched_fragments": 834, "total_fragments": 2120, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }