{ "type": "genome", "identifier": "GCF_010634845.1", "organism": "Pseudomonas antarctica", "title": "Pseudomonas antarctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010634845.1", "bioproject": "PRJNA224116", "biosample": "SAMN03276536", "wgs_master": "JXDI00000000.1", "refseq_category": "na", "taxid": "219572", "species_taxid": "219572", "organism_name": "Pseudomonas antarctica", "infraspecific_name": "strain=CMS 35", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/14", "asm_name": "ASM1063484v1", "asm_submitter": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_010634845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/634/845/GCF_010634845.1_ASM1063484v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6368703", "genome_size_ungapped": "6368703", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010634845.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5863", "protein_coding_gene_count": "5606", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-14", "dateModified": "2020-02-14", "datePublished": "2020-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas antarctica" ], "sample_taxid": [ "219572" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: pond L3 Wright valley" ], "sample_host_location_id": [], "data_size": "1.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6368703", "Number of Sequences": "8", "Longest Sequences (bp)": "4226903", "N50 (bp)": "4226903", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "5866", "Average Protein Length": "320.4", "Coding Ratio (%)": "88.5", "Number of rRNAs": "16", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas antarctica", "strain": "strain=CMS 35", "accession": "GCA_010634845.1", "taxid": 219572, 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