{ "type": "genome", "identifier": "GCF_010667645.1", "organism": "Bifidobacterium platyrrhinorum", "title": "Bifidobacterium platyrrhinorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bologna", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010667645.1", "bioproject": "PRJNA224116", "biosample": "SAMN13066448", "wgs_master": "WHZV00000000.1", "refseq_category": "reference genome", "taxid": "2661628", "species_taxid": "2661628", "organism_name": "Bifidobacterium platyrrhinorum", "infraspecific_name": "strain=SMA15", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/14", "asm_name": "ASM1066764v1", "asm_submitter": "University of Bologna", "gbrs_paired_asm": "GCA_010667645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/667/645/GCF_010667645.1_ASM1066764v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2615073", "genome_size_ungapped": "2614369", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010667645.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2215", "protein_coding_gene_count": "2097", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-14", "dateModified": "2020-02-14", "datePublished": "2020-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium platyrrhinorum" ], "sample_taxid": [ "2661628" ], "sample_host_organism": [ "squirrel monkey" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy:Verona" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2615073", "Number of Sequences": "27", "Longest Sequences (bp)": "778732", "N50 (bp)": "241328", "Gap Ratio (%)": "0.027839", "GCcontent (%)": "66.4", "Number of CDSs": "2149", "Average Protein Length": "352.0", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "72", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium platyrrhinorum", "strain": "strain=SMA15", "accession": "GCA_010667645.1", "taxid": 2661628, "species_taxid": 2661628, "relation_to_type": "type", "validated": true, "ani": 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859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium santillanense", "strain": "strain=MA2", "accession": "GCA_018555385.1", "taxid": 2809028, "species_taxid": 2809028, "relation_to_type": "type", "validated": true, "ani": 87.2291, "matched_fragments": 586, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium saguinibicoloris", "strain": "strain=79T10", "accession": "GCA_019331725.1", "taxid": 2834433, "species_taxid": 2834433, "relation_to_type": "type", "validated": true, "ani": 87.2016, "matched_fragments": 581, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium rousetti", "strain": "strain=RST9", "accession": "GCA_008698235.1", "taxid": 2045439, "species_taxid": 2045439, "relation_to_type": "type", "validated": true, "ani": 86.4124, "matched_fragments": 556, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 84.0746, "matched_fragments": 511, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 84.0304, "matched_fragments": 536, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_001005065.1", "taxid": 158787, "species_taxid": 158787, "relation_to_type": "type", "validated": true, "ani": 83.527, "matched_fragments": 477, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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