{
    "type": "genome",
    "identifier": "GCF_010667665.1",
    "organism": "Bifidobacterium ramosum",
    "title": "Bifidobacterium ramosum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Bologna",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010667665.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13066446",
        "wgs_master": "WHZX00000000.1",
        "refseq_category": "na",
        "taxid": "1798158",
        "species_taxid": "1798158",
        "organism_name": "Bifidobacterium ramosum",
        "infraspecific_name": "strain=TREM",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/14",
        "asm_name": "ASM1066766v1",
        "asm_submitter": "University of Bologna",
        "gbrs_paired_asm": "GCA_010667665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/667/665/GCF_010667665.1_ASM1066766v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3046006",
        "genome_size_ungapped": "3045162",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010667665.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "2360",
        "protein_coding_gene_count": "2268",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-14",
    "dateModified": "2020-02-14",
    "datePublished": "2020-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium ramosum"
        ],
        "sample_taxid": [
            "1798158"
        ],
        "sample_host_organism": [
            "cotton-top tamarin"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy:Verona"
        ],
        "sample_host_location_id": [],
        "data_size": "0.838 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3046006",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "647464",
        "N50 (bp)": "432090",
        "Gap Ratio (%)": "0.029514",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "2334",
        "Average Protein Length": "372.3",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium ramosum",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 994,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_009299505.1",
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                "validated": true,
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                "status": "conclusive"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium aerophilum",
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                "accession": "GCA_010667685.1",
                "taxid": 1798155,
                "species_taxid": 1798155,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 689,
                "total_fragments": 999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconis",
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                "species_taxid": 2834435,
                "relation_to_type": "type",
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                "matched_fragments": 674,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium biavatii",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
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                "species_taxid": 2809027,
                "relation_to_type": "type",
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                "ani": 86.8719,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium scardovii",
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                "accession": "GCA_000770985.1",
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                "relation_to_type": "type",
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                "ani": 84.1057,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium scardovii",
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                "accession": "GCA_001005065.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
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                "species_taxid": 2834437,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
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                "accession": "GCA_022691205.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium mizhiense",
                "strain": "strain=S053-2",
                "accession": "GCA_020884755.1",
                "taxid": 2879940,
                "species_taxid": 2879940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1841,
                "matched_fragments": 137,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Humibacter ginsenosidimutans",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_009299505.1",
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        ]
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    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}