{
    "type": "genome",
    "identifier": "GCF_010669145.1",
    "organism": "Rhizobium oryzihabitans",
    "title": "Rhizobium oryzihabitans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010669145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14048699",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2267833",
        "species_taxid": "2267833",
        "organism_name": "Rhizobium oryzihabitans",
        "infraspecific_name": "strain=M15",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "ASM1066914v1",
        "asm_submitter": "Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_010669145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/669/145/GCF_010669145.1_ASM1066914v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5858741",
        "genome_size_ungapped": "5858741",
        "gc_percent": "59.500000",
        "replicon_count": "9",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010669145.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "5744",
        "protein_coding_gene_count": "5239",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium oryzihabitans"
        ],
        "sample_taxid": [
            "2267833"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.634 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 30.0,
            "max": 30.0
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5858741",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "3195345",
        "N50 (bp)": "3195345",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "5998",
        "Average Protein Length": "283.9",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "16",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "species_taxid": 2792015,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "status": "below_threshold"
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium tumefaciens",
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                "species_taxid": 358,
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                "validated": true,
                "ani": 88.8551,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium salinitolerans",
                "strain": "strain=YIC 5082",
                "accession": "GCA_002008225.1",
                "taxid": 1183413,
                "species_taxid": 1183413,
                "relation_to_type": "type",
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                "ani": 88.0843,
                "matched_fragments": 1295,
                "total_fragments": 1949,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium pusense",
                "strain": "strain=LMG 25623",
                "accession": "GCA_900102105.1",
                "taxid": 648995,
                "species_taxid": 648995,
                "relation_to_type": "type",
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                "ani": 86.8906,
                "matched_fragments": 1318,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
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                "accession": "GCA_020883495.1",
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                "species_taxid": 352475,
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                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Shinella curvata",
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                "accession": "GCA_022899935.1",
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                "ani": 79.1828,
                "matched_fragments": 636,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella yambaruensis",
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                "accession": "GCA_022899355.1",
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                "ani": 79.1597,
                "matched_fragments": 694,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_010669145.1",
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                "num_clustered_genomes": 9,
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            },
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                "num_clustered_genomes": 3,
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            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000949865.1",
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    "_bac2feature": {
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}