{ "type": "genome", "identifier": "GCF_010671565.1", "organism": "Spongiivirga citrea", "title": "Spongiivirga citrea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010671565.1", "bioproject": "PRJNA224116", "biosample": "SAMN13880826", "wgs_master": "JAABOQ000000000.1", "refseq_category": "reference genome", "taxid": "1481457", "species_taxid": "1481457", "organism_name": "Spongiivirga citrea", "infraspecific_name": "strain=KCTC 32990", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/16", "asm_name": "ASM1067156v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_010671565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/671/565/GCF_010671565.1_ASM1067156v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4150764", "genome_size_ungapped": "4150764", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010671565.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3661", "protein_coding_gene_count": "3607", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-16", "dateModified": "2020-02-16", "datePublished": "2020-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Spongiivirga citrea" ], "sample_taxid": [ "1481457" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.172 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4150764", "Number of Sequences": "17", "Longest Sequences (bp)": "786345", "N50 (bp)": "637254", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "3578", "Average Protein Length": "344.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spongiivirga citrea", "strain": "strain=KCTC 32990", "accession": "GCA_010671565.1", "taxid": 1481457, "species_taxid": 1481457, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1370, "total_fragments": 1373, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 77.448, "matched_fragments": 94, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.1937, "matched_fragments": 100, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa agariphila", "strain": "strain=type strain: KMM 3901", "accession": "GCA_000723205.1", "taxid": 320324, "species_taxid": 320324, "relation_to_type": "type", "validated": true, "ani": 77.1692, "matched_fragments": 82, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.0944, "matched_fragments": 86, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 77.0936, "matched_fragments": 97, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 77.0581, "matched_fragments": 108, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 77.0552, "matched_fragments": 108, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.9148, "matched_fragments": 96, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.801, "matched_fragments": 104, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia zhangzhouensis", "strain": "strain=MCCC 1A00726", "accession": "GCA_001005305.1", "taxid": 1620405, "species_taxid": 1620405, "relation_to_type": "type", "validated": true, "ani": 76.7258, "matched_fragments": 81, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 76.6916, "matched_fragments": 90, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.6816, "matched_fragments": 100, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 76.6636, "matched_fragments": 93, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 76.6146, "matched_fragments": 103, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.5808, "matched_fragments": 106, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana agarivorans", "strain": "strain=JW-26", "accession": "GCA_001642835.1", "taxid": 481183, "species_taxid": 481183, "relation_to_type": "type", "validated": true, "ani": 76.5426, "matched_fragments": 87, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.5216, "matched_fragments": 90, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.521, "matched_fragments": 90, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga algicola", "strain": "strain=DSM 14237", "accession": "GCA_000186265.1", "taxid": 59600, "species_taxid": 59600, "relation_to_type": "type", "validated": true, "ani": 76.5189, "matched_fragments": 98, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter onchidii", "strain": "strain=XY-114", "accession": "GCA_004804355.1", "taxid": 2562860, "species_taxid": 2562860, "relation_to_type": "type", "validated": true, "ani": 76.4849, "matched_fragments": 86, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia algoritergicola", "strain": "strain=APA-1", "accession": "GCA_008086165.1", "taxid": 291187, "species_taxid": 291187, "relation_to_type": "type", "validated": true, "ani": 76.4752, "matched_fragments": 102, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.4427, "matched_fragments": 100, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 76.4216, "matched_fragments": 106, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibaculum sediminum", "strain": "strain=TT11", "accession": "GCA_014596945.1", "taxid": 2770637, "species_taxid": 2770637, "relation_to_type": "type", "validated": true, "ani": 76.3203, "matched_fragments": 92, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 76.293, "matched_fragments": 97, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, "ani": 76.281, "matched_fragments": 77, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 75.9158, "matched_fragments": 79, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010671565.1", "gtdb_species": "s__Spongiivirga citrea", "ani": 100.0, "matched_fragments": 1370, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Spongiivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000723205.1", "gtdb_species": "s__Formosa agariphila", "ani": 77.1692, "matched_fragments": 82, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Formosa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013249065.1", "gtdb_species": "s__Winogradskyella litoriviva", "ani": 77.1131, "matched_fragments": 96, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, 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