{ "type": "genome", "identifier": "GCF_010671605.1", "organism": "Leptobacterium flavescens", "title": "Leptobacterium flavescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010671605.1", "bioproject": "PRJNA224116", "biosample": "SAMN13880824", "wgs_master": "JAABOO000000000.1", "refseq_category": "reference genome", "taxid": "472055", "species_taxid": "472055", "organism_name": "Leptobacterium flavescens", "infraspecific_name": "strain=KCTC 22160", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/16", "asm_name": "ASM1067160v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_010671605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/671/605/GCF_010671605.1_ASM1067160v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4214180", "genome_size_ungapped": "4214180", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010671605.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3840", "protein_coding_gene_count": "3774", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-16", "dateModified": "2020-02-16", "datePublished": "2020-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptobacterium flavescens" ], "sample_taxid": [ "472055" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Palau:Iwayama Bay" ], "sample_host_location_id": [], "data_size": "1.190 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4214180", "Number of Sequences": "9", "Longest Sequences (bp)": "1729189", "N50 (bp)": "1032064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "3768", "Average Protein Length": "334.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "5", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptobacterium flavescens", "strain": "strain=KCTC 22160", "accession": "GCA_010671605.1", "taxid": 472055, "species_taxid": 472055, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1402, "total_fragments": 1402, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Robertkochia marina", "strain": "strain=CC-AMO-30D", "accession": "GCA_007279605.1", "taxid": 1227945, "species_taxid": 1227945, "relation_to_type": "type", "validated": true, "ani": 77.4599, "matched_fragments": 108, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhouia amylolytica", "strain": "strain=CGMCC 1.6114", "accession": "GCA_900116365.1", "taxid": 376730, "species_taxid": 376730, "relation_to_type": "type", "validated": true, "ani": 77.3938, "matched_fragments": 90, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertkochia marina", "strain": "strain=CC-AMO-30D", "accession": "GCA_004799345.1", "taxid": 1227945, "species_taxid": 1227945, "relation_to_type": "type", "validated": true, "ani": 77.2914, "matched_fragments": 106, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { 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76.7082, "matched_fragments": 75, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomicrobium weinanense", "strain": "strain=FJxs", "accession": "GCA_014518365.1", "taxid": 2842200, "species_taxid": 2842200, "relation_to_type": "type", "validated": true, "ani": 76.6998, "matched_fragments": 92, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomicrobium pectinilyticum", "strain": "strain=5DNS001", "accession": "GCA_003725735.1", "taxid": 1084421, "species_taxid": 1084421, "relation_to_type": "type", "validated": true, "ani": 76.6545, "matched_fragments": 105, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia galactanivorans", "strain": "strain=DsiJT", "accession": "GCA_000973105.1", "taxid": 63186, "species_taxid": 63186, "relation_to_type": "type", "validated": true, "ani": 76.6294, "matched_fragments": 73, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella lutea", "strain": "strain=YJ019", "accession": "GCA_022489035.1", "taxid": 1607951, "species_taxid": 1607951, "relation_to_type": "type", "validated": true, "ani": 76.62, "matched_fragments": 73, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gillisia marina", "strain": "strain=CBA3202", "accession": "GCA_000258765.1", "taxid": 1167637, "species_taxid": 1167637, "relation_to_type": "type", "validated": true, "ani": 76.4426, "matched_fragments": 55, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia aestuariivivens", "strain": "strain=YSTF-M3", "accession": "GCA_014397005.1", "taxid": 2759037, "species_taxid": 2759037, "relation_to_type": "type", "validated": true, "ani": 76.4404, "matched_fragments": 62, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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