{ "type": "genome", "identifier": "GCF_010686625.1", "organism": "Modestobacter muralis", "title": "Modestobacter muralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Medical Sciences & Peking Union Medical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010686625.1", "bioproject": "PRJNA224116", "biosample": "SAMN14070164", "wgs_master": "JAAGWB000000000.1", "refseq_category": "na", "taxid": "1608614", "species_taxid": "1608614", "organism_name": "Modestobacter muralis", "infraspecific_name": "strain=DSM 100205", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "ASM1068662v1", "asm_submitter": "Chinese Academy of Medical Sciences & Peking Union Medical College", "gbrs_paired_asm": "GCA_010686625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/686/625/GCF_010686625.1_ASM1068662v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4543992", "genome_size_ungapped": "4543992", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010686625.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4404", "protein_coding_gene_count": "4301", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Modestobacter muralis" ], "sample_taxid": [ "1608614" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Salamanca" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4543992", "Number of Sequences": "89", "Longest Sequences (bp)": "621627", "N50 (bp)": "98008", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.0", "Number of CDSs": "4307", "Average Protein Length": "310.6", "Coding Ratio (%)": "88.3", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010682105.1", "taxid": 1608614, "species_taxid": 1608614, 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1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter altitudinis", "strain": "strain=1G4", "accession": "GCA_005930475.1", "taxid": 2213158, "species_taxid": 2213158, "relation_to_type": "type", "validated": true, "ani": 84.9231, "matched_fragments": 1019, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter excelsi", "strain": "strain=1G6", "accession": "GCA_005930495.1", "taxid": 2213161, "species_taxid": 2213161, "relation_to_type": "type", "validated": true, "ani": 84.9174, "matched_fragments": 965, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter roseus", "strain": "strain=DSM 45764", "accession": "GCA_007994135.1", "taxid": 1181884, "species_taxid": 1181884, "relation_to_type": "type", "validated": true, "ani": 84.6644, "matched_fragments": 991, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010682105.1", "gtdb_species": "s__Modestobacter muralis", "ani": 100.0, "matched_fragments": 1422, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_019112525.1", "gtdb_species": "s__Modestobacter sp019112525", "ani": 90.369, "matched_fragments": 1132, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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