{ "tc_result": [ { "organism_name": "Leifsonia aquatica", "strain": "strain=ATCC 14665", "accession": "GCA_000469485.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 80.5185, "matched_fragments": 455, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia shinshuensis", "strain": "strain=DSM 15165", "accession": "GCA_013410375.1", "taxid": 150026, "species_taxid": 150026, "relation_to_type": "type", "validated": true, "ani": 80.459, "matched_fragments": 657, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia naganoensis", "strain": "strain=DSM 15166", "accession": "GCA_013410615.1", "taxid": 150025, "species_taxid": 150025, "relation_to_type": "type", "validated": true, "ani": 80.3689, "matched_fragments": 610, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia aquatica", "strain": "strain=DSM 20146", "accession": "GCA_014190775.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 80.337, "matched_fragments": 604, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia soli", "strain": "strain=DSM 23871", "accession": "GCA_013408745.1", "taxid": 582665, "species_taxid": 582665, "relation_to_type": "type", "validated": true, "ani": 80.2891, "matched_fragments": 575, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium tepidiphilum", "strain": "strain=NEAU-85", "accession": "GCA_003716325.1", "taxid": 2486026, "species_taxid": 2486026, "relation_to_type": "type", "validated": true, "ani": 79.3175, "matched_fragments": 343, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces binzhouensis", "strain": "strain=CGMCC 4.7180", "accession": "GCA_004135055.1", "taxid": 1817495, "species_taxid": 1817495, "relation_to_type": "type", "validated": true, "ani": 79.1451, "matched_fragments": 308, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces tardus", "strain": "strain=SJ-23", "accession": "GCA_003710805.1", "taxid": 2583849, "species_taxid": 2583849, "relation_to_type": "type", "validated": true, "ani": 78.9026, "matched_fragments": 438, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.7136, "matched_fragments": 344, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.7047, "matched_fragments": 406, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter zhangzhiyongii", "strain": "strain=DM1", "accession": "GCA_014775655.1", "taxid": 2768071, "species_taxid": 2768071, "relation_to_type": "type", "validated": true, "ani": 78.7, "matched_fragments": 334, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gryllotalpicola protaetiae", "strain": "strain=2DFW10M-5", "accession": "GCA_003627055.1", "taxid": 2419771, "species_taxid": 2419771, "relation_to_type": "type", "validated": true, "ani": 78.6927, "matched_fragments": 338, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.6796, "matched_fragments": 455, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 78.6628, "matched_fragments": 369, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 78.5972, "matched_fragments": 395, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5004, "matched_fragments": 334, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella populi", "strain": "strain=8H24J-4-2", "accession": "GCA_004078655.1", "taxid": 2498850, "species_taxid": 2498850, "relation_to_type": "type", "validated": true, "ani": 78.1697, "matched_fragments": 294, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010686705.1", "gtdb_species": "s__Diaminobutyricibacter tongyongensis", "ani": 100.0, "matched_fragments": 1346, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Diaminobutyricibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_012317045.1", "gtdb_species": "s__Leifsonia sp002105485", "ani": 80.8928, "matched_fragments": 642, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001428745.1", "gtdb_species": "s__Leifsonia sp001428745", "ani": 80.833, "matched_fragments": 626, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217625.1", "gtdb_species": "s__Leifsonia shinshuensis_A", "ani": 80.456, "matched_fragments": 643, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410375.1", "gtdb_species": "s__Leifsonia shinshuensis", "ani": 80.4444, "matched_fragments": 659, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014190775.1", "gtdb_species": "s__Leifsonia aquatica", "ani": 80.3523, "matched_fragments": 602, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001898805.1", "gtdb_species": "s__Leifsonia sp001898805", "ani": 80.3096, "matched_fragments": 595, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001647635.1", "gtdb_species": "s__Leifsonia xyli_A", "ani": 80.3058, "matched_fragments": 605, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408745.1", "gtdb_species": "s__Leifsonia soli", "ani": 80.3032, "matched_fragments": 574, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001423695.1", "gtdb_species": "s__Leifsonia sp001423695", "ani": 80.2988, "matched_fragments": 638, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003664105.1", "gtdb_species": "s__Leifsonia sp003664105", "ani": 80.2735, "matched_fragments": 607, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017565305.1", "gtdb_species": "s__Leifsonia sp017565305", "ani": 80.262, "matched_fragments": 611, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000633535.1", "gtdb_species": "s__Leifsonia aquatica_A", "ani": 80.1663, "matched_fragments": 586, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765225.1", "gtdb_species": "s__Leifsonia sp009765225", "ani": 79.9956, "matched_fragments": 559, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797855.1", "gtdb_species": "s__Compostimonas suwonensis", "ani": 79.2372, "matched_fragments": 434, "total_fragments": 1347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Compostimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }