{ "type": "genome", "identifier": "GCF_010723225.1", "organism": "Mycolicibacter senuensis", "title": "Mycolicibacter senuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Infection Metagenomics, Osaka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010723225.1", "bioproject": "PRJNA224116", "biosample": "SAMD00153200", "wgs_master": "BLKV00000000.1", "refseq_category": "reference genome", "taxid": "386913", "species_taxid": "386913", "organism_name": "Mycolicibacter senuensis", "infraspecific_name": "strain=JCM 16017", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/06", "asm_name": "ASM1072322v1", "asm_submitter": "Department of Infection Metagenomics, Osaka University", "gbrs_paired_asm": "GCA_010723225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/723/225/GCF_010723225.1_ASM1072322v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4611963", "genome_size_ungapped": "4611963", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010723225.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4338", "protein_coding_gene_count": "4183", "non_coding_gene_count": "55", "pubmed_id": "31287781" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-06", "dateModified": "2020-02-06", "datePublished": "2020-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacter senuensis" ], "sample_taxid": [ "386913" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.247 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 80.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4611963", "Number of Sequences": "3", "Longest Sequences (bp)": "2700447", "N50 (bp)": "2700447", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "4356", "Average Protein Length": "328.9", "Coding Ratio (%)": "93.2", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacter senuensis", "strain": "strain=JCM 16017", "accession": "GCA_010723225.1", "taxid": 386913, "species_taxid": 386913, 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"total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=JCM 12687", "accession": "GCA_010728725.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 80.3783, "matched_fragments": 794, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 80.0909, "matched_fragments": 805, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 80.0589, "matched_fragments": 780, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=JCM 14738", "accession": "GCA_010730195.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, "ani": 79.686, "matched_fragments": 767, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=CIP 106428", "accession": "GCA_002101745.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 79.4378, "matched_fragments": 666, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_010723135.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 79.4134, "matched_fragments": 669, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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