{ "type": "genome", "identifier": "GCF_010725885.1", "organism": "Mycolicibacterium tokaiense", "title": "Mycolicibacterium tokaiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Infection Metagenomics, Osaka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010725885.1", "bioproject": "PRJNA224116", "biosample": "SAMD00153164", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "39695", "species_taxid": "39695", "organism_name": "Mycolicibacterium tokaiense", "infraspecific_name": "strain=JCM 6373", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/06", "asm_name": "ASM1072588v1", "asm_submitter": "Department of Infection Metagenomics, Osaka University", "gbrs_paired_asm": "GCA_010725885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/725/885/GCF_010725885.1_ASM1072588v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6328149", "genome_size_ungapped": "6328149", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010725885.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "6124", "protein_coding_gene_count": "6005", "non_coding_gene_count": "56", "pubmed_id": "31287781" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-06", "dateModified": "2020-02-06", "datePublished": "2020-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium tokaiense" ], "sample_taxid": [ "39695" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.723 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6328149", "Number of Sequences": "1", "Longest Sequences (bp)": "6328149", "N50 (bp)": "6328149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "6113", "Average Protein Length": "323.6", "Coding Ratio (%)": "93.8", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium tokaiense", "strain": "strain=JCM 6373", "accession": "GCA_010725885.1", "taxid": 39695, "species_taxid": 39695, 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