{ "type": "genome", "identifier": "GCF_010727945.1", "organism": "Mycobacterium cookii", "title": "Mycobacterium cookii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Infection Metagenomics, Osaka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010727945.1", "bioproject": "PRJNA224116", "biosample": "SAMD00153177", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1775", "species_taxid": "1775", "organism_name": "Mycobacterium cookii", "infraspecific_name": "strain=JCM 12404", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/06", "asm_name": "ASM1072794v1", "asm_submitter": "Department of Infection Metagenomics, Osaka University", "gbrs_paired_asm": "GCA_010727945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/727/945/GCF_010727945.1_ASM1072794v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5318517", "genome_size_ungapped": "5318517", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010727945.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5037", "protein_coding_gene_count": "4878", "non_coding_gene_count": "56", "pubmed_id": "31287781" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-06", "dateModified": "2020-02-06", "datePublished": "2020-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium cookii" ], "sample_taxid": [ "1775" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5318517", "Number of Sequences": "1", "Longest Sequences (bp)": "5318517", "N50 (bp)": "5318517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "4989", "Average Protein Length": "329.0", "Coding Ratio (%)": "92.6", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium cookii", "strain": "strain=JCM 12404", "accession": "GCA_010727945.1", "taxid": 1775, "species_taxid": 1775, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_002105755.1", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3732, "matched_fragments": 952, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 80.2477, "matched_fragments": 945, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 80.196, "matched_fragments": 918, "total_fragments": 1772, "ani_threshold": 95, "status": 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