{ "type": "genome", "identifier": "GCF_010728525.1", "organism": "Mycobacterium shottsii", "title": "Mycobacterium shottsii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Infection Metagenomics, Osaka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010728525.1", "bioproject": "PRJNA224116", "biosample": "SAMD00153180", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "133549", "species_taxid": "133549", "organism_name": "Mycobacterium shottsii", "infraspecific_name": "strain=JCM 12657", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/06", "asm_name": "ASM1072852v1", "asm_submitter": "Department of Infection Metagenomics, Osaka University", "gbrs_paired_asm": "GCA_010728525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/728/525/GCF_010728525.1_ASM1072852v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5973149", "genome_size_ungapped": "5973149", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010728525.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5662", "protein_coding_gene_count": "4687", "non_coding_gene_count": "53", "pubmed_id": "31287781" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-06", "dateModified": "2020-02-06", "datePublished": "2020-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium shottsii" ], "sample_taxid": [ "133549" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.632 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5973149", "Number of Sequences": "1", "Longest Sequences (bp)": "5973149", "N50 (bp)": "5973149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "6171", "Average Protein Length": "286.8", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium shottsii", "strain": "strain=JCM 12657", "accession": "GCA_010728525.1", "taxid": 133549, "species_taxid": 133549, 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