{
    "type": "genome",
    "identifier": "GCF_010728925.1",
    "organism": "Mycolicibacterium gadium",
    "title": "Mycolicibacterium gadium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Infection Metagenomics, Osaka University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010728925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00153182",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1794",
        "species_taxid": "1794",
        "organism_name": "Mycolicibacterium gadium",
        "infraspecific_name": "strain=JCM 12688",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/06",
        "asm_name": "ASM1072892v1",
        "asm_submitter": "Department of Infection Metagenomics, Osaka University",
        "gbrs_paired_asm": "GCA_010728925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/728/925/GCF_010728925.1_ASM1072892v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5964999",
        "genome_size_ungapped": "5964999",
        "gc_percent": "65.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010728925.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5925",
        "protein_coding_gene_count": "5741",
        "non_coding_gene_count": "54",
        "pubmed_id": "31287781"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-06",
    "dateModified": "2020-02-06",
    "datePublished": "2020-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycolicibacterium gadium"
        ],
        "sample_taxid": [
            "1794"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.646 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5964999",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5964999",
        "N50 (bp)": "5964999",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.7",
        "Number of CDSs": "5917",
        "Average Protein Length": "311.9",
        "Coding Ratio (%)": "92.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mycolicibacterium gadium",
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                "status": "conclusive"
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            {
                "organism_name": "Mycolicibacterium tusciae",
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                "species_taxid": 75922,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Mycolicibacterium moriokaense",
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            },
            {
                "organism_name": "Mycolicibacterium moriokaense",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium rutilum",
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                "accession": "GCA_900108565.1",
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                "species_taxid": 370526,
                "relation_to_type": "type",
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                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium phlei",
                "strain": "strain=DSM 43239 = CCUG 21000",
                "accession": "GCA_001582015.1",
                "taxid": 1771,
                "species_taxid": 1771,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium lehmannii",
                "strain": "strain=CECT 8763",
                "accession": "GCA_002245535.1",
                "taxid": 2048550,
                "species_taxid": 2048550,
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                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium malmesburyense",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium elephantis",
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                "accession": "GCA_004014805.1",
                "taxid": 81858,
                "species_taxid": 81858,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
                "organism_name": "Mycolicibacterium pulveris",
                "strain": "strain=JCM 6370",
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                "species_taxid": 36813,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Mycolicibacterium agri",
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                "relation_to_type": "type",
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                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "completeness": 100.0,
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        "gtdb_result": [
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                "accession": "GCF_010728925.1",
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                "matched_fragments": 1988,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
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                "accession": "GCF_002591975.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}