# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence1:334..588(-)	frameshift		545,674,584,750,656,629,149,663,344,347,158	WP_013228957.1	AMP-binding protein	95.2	7.8	41.2
MGA_4	LOCUS_00040	sequence1:1471..2019(-)	frameshift		1969,1740,2020,1798	WP_011728229.1	enoyl-CoA hydratase/isomerase family protein	88.5	60.8	36.4
MGA_5	LOCUS_00050	sequence1:2358..2801(-)	frameshift		2365,2815	WP_011728229.1	enoyl-CoA hydratase/isomerase family protein	74.8	41.0	46.4
MGA_8	LOCUS_00080	sequence1:4221..4727(-)	frameshift		4827	WP_011728230.1	enoyl-CoA hydratase-related protein	97.6	60.1	49.4
MGA_11	LOCUS_00110	sequence1:6821..7201(+)	frameshift		6815	WP_011227837.1	enoyl-CoA hydratase-related protein	97.6	48.4	46.3
MGA_12	LOCUS_00120	sequence1:7293..7904(-)	frameshift		7977,7980	WP_003400979.1	SDR family oxidoreductase	99.5	73.1	52.6
MGA_15	LOCUS_00150	sequence1:9708..10700(-)	frameshift		10690	WP_003896236.1	amidohydrolase family protein	96.1	73.8	74.5
MGA_22	LOCUS_00220	sequence1:15673..15939(+)	frameshift		15861	WP_011728229.1	enoyl-CoA hydratase/isomerase family protein	90.9	35.1	44.7
MGA_23	LOCUS_00230	sequence1:15894..16493(+)	frameshift		15861	WP_011728229.1	enoyl-CoA hydratase/isomerase family protein	94.0	69.8	58.3
MGA_24	LOCUS_00240	sequence1:16533..17429(-)	frameshift		17464	WP_013228941.1	amidohydrolase family protein	99.0	76.4	39.3
MGA_36	LOCUS_00360	sequence1:29122..30774(+)	partial			WP_003900169.1	hypothetical protein	50.2	62.0	33.3
MGA_69	LOCUS_00690	sequence1:60016..61371(+)	partial			WP_005079778.1	MCE family protein	81.6	72.2	48.2
MGA_93	LOCUS_00930	sequence1:85190..86569(+)	partial			WP_011085728.1	phosphotransferase family protein	59.0	84.8	28.0
MGA_95	LOCUS_00950	sequence1:88784..89197(-)	partial			WP_011730106.1	OB-fold domain-containing protein	100.0	24.5	40.6
MGA_96	LOCUS_00960	sequence1:89242..90387(+)	partial			WP_011730106.1	OB-fold domain-containing protein	96.9	68.2	41.7
MGA_103	LOCUS_01030	sequence1:96951..97211(+)	partial			WP_013228958.1	hypothetical protein	75.6	61.2	49.2
MGA_117	LOCUS_01170	sequence1:110257..111534(-)	partial			WP_010950435.1	DUF4226 domain-containing protein	27.1	40.8	48.7
MGA_137	LOCUS_01370	sequence1:131332..131634(-)	partial			WP_003403731.1	sigma-70 family RNA polymerase sigma factor SigL	90.0	50.8	46.7
MGA_257	LOCUS_02570	sequence1:265217..265546(-)	partial			WP_003891979.1	DUF5994 family protein	93.6	62.9	38.2
MGA_260	LOCUS_02600	sequence1:267432..268223(+)	partial			WP_013227111.1	LuxR C-terminal-related transcriptional regulator	26.6	20.6	55.7
MGA_262	LOCUS_02620	sequence1:269139..270137(-)	partial			WP_011103368.1	oxygenase MpaB family protein	59.3	59.0	30.8
MGA_278	LOCUS_02780	sequence1:283411..284460(-)	partial			WP_003900223.1	resuscitation-promoting factor protein RpfA	43.3	37.3	63.8
MGA_292	LOCUS_02920	sequence1:295165..295440(+)	partial			WP_011730711.1	DUF2537 domain-containing protein	63.7	63.7	62.1
MGA_302	LOCUS_03020	sequence1:305477..305974(+)	partial			WP_003404684.1	peptidoglycan-binding protein ArfA	90.3	49.7	31.9
MGA_318	LOCUS_03180	sequence1:323383..325371(+)	partial			WP_013224715.1	hypothetical protein	52.7	81.1	25.0
MGA_326	LOCUS_03260	sequence1:331858..332340(+)	partial			WP_013226322.1	MarR family winged helix-turn-helix transcriptional regulator	63.8	64.5	40.2
MGA_374	LOCUS_03740	sequence1:386755..386994(+)	partial			WP_011726891.1	FAD-linked oxidase C-terminal domain-containing protein	87.3	11.3	61.4
MGA_375	LOCUS_03750	sequence1:387061..388020(+)	partial			WP_003404801.1	fumarylacetoacetate hydrolase family protein	99.1	48.8	70.6
MGA_376	LOCUS_03760	sequence1:388017..390128(-)	partial			WP_011727252.1	hypothetical protein	10.8	6.0	45.5
MGA_377	LOCUS_03770	sequence1:390259..392370(-)	partial			WP_000391771.1	cellulase family glycosylhydrolase	32.1	43.3	24.0
MGA_380	LOCUS_03800	sequence1:393726..394436(-)	partial			WP_003898656.1	DUF4873 domain-containing protein	66.1	48.0	43.1
MGA_381	LOCUS_03810	sequence1:394433..395335(-)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	69.0
MGA_390	LOCUS_03900	sequence1:404906..405169(-)	partial			WP_010907562.1	chorismate mutase	78.2	64.8	82.4
MGA_421	LOCUS_04210	sequence1:439403..440797(-)	partial			WP_010950653.1	alpha/beta hydrolase	43.3	32.2	34.0
MGA_439	LOCUS_04390	sequence1:459655..460095(+)	partial			WP_013230043.1	large-conductance mechanosensitive channel protein MscL	70.5	73.9	48.5
MGA_441	LOCUS_04410	sequence1:460821..461174(-)	partial			WP_010907580.1	zinc ribbon domain-containing protein	50.4	59.6	83.1
MGA_483	LOCUS_04830	sequence1:500439..501914(+)	partial			WP_003901258.1	PPE family protein	60.5	69.9	42.9
MGA_504	LOCUS_05040	sequence1:525457..526173(+)	partial			WP_011143331.1	mannose-1-phosphate guanyltransferase	79.8	23.1	33.2
MGA_506	LOCUS_05060	sequence1:526507..527655(-)	partial			WP_003404782.1	serine/threonine protein kinase PknD	53.9	30.1	53.9
MGA_512	LOCUS_05120	sequence1:531367..532287(+)	frameshift		531945,532029	WP_015909439.1	flagellar filament outer layer protein FlaA	96.4	33.9	32.3
MGA_515	LOCUS_05150	sequence1:534327..535058(-)	frameshift		534761,534707	WP_011176649.1	glycosyltransferase	73.3	25.8	33.5
MGA_520	LOCUS_05200	sequence1:541558..542061(-)	partial			WP_024265836.1	DUF2235 domain-containing protein	31.1	11.5	59.6
MGA_526	LOCUS_05260	sequence1:549882..551396(-)	partial			WP_005098619.1	PPE family protein	31.7	31.4	60.0
MGA_531	LOCUS_05310	sequence1:555330..555788(+)	partial			WP_003405293.1	septum formation initiator family protein	78.3	52.2	64.7
MGA_548	LOCUS_05480	sequence1:574057..575748(-)	partial			WP_003911742.1	alpha/beta hydrolase	62.3	54.7	26.7
MGA_551	LOCUS_05510	sequence1:576381..576626(+)	frameshift,internal_stop_codon	576716..576718(+)	576636,576629,576566	WP_003907556.1	integrase	59.3	46.2	79.2
MGA_556	LOCUS_05560	sequence1:579323..579637(+)	partial			WP_010950565.1	DUF2742 domain-containing protein	89.4	68.2	46.2
MGA_557	LOCUS_05570	sequence1:579634..581412(+)	partial			WP_015775718.1	hypothetical protein	54.6	77.3	38.9
MGA_585	LOCUS_05850	sequence1:607129..607890(+)	partial			WP_010908871.1	RDD family protein	66.0	69.1	57.6
MGA_612	LOCUS_06120	sequence1:637136..637420(+)	partial			WP_011726759.1	adenylate/guanylate cyclase domain-containing protein	58.5	5.2	54.5
MGA_630	LOCUS_06300	sequence1:653755..654456(-)	frameshift		654470	WP_003898734.1	hypothetical protein	98.3	80.1	76.4
MGA_647	LOCUS_06470	sequence1:671844..672203(-)	frameshift		672234	WP_003896200.1	mycofactocin-coupled SDR family oxidoreductase	76.5	30.0	57.1
MGA_661	LOCUS_06610	sequence1:682918..683442(-)	frameshift,internal_stop_codon	683448..683450(-)	683441	WP_009936776.1	DUF1697 domain-containing protein	97.1	82.2	62.9
MGA_699	LOCUS_06990	sequence1:722075..722386(+)	partial			WP_010908107.1	DivIVA domain-containing protein	75.7	68.4	71.8
MGA_704	LOCUS_07040	sequence1:725883..727265(-)	partial			WP_014876908.1	DUF2599 domain-containing protein	23.0	77.4	51.9
MGA_740	LOCUS_07400	sequence1:766308..767567(-)	partial			WP_003911094.1	PE-PPE domain-containing protein	73.0	63.7	34.6
MGA_743	LOCUS_07430	sequence1:769588..772917(-)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	24.9	28.7	51.8
MGA_798	LOCUS_07980	sequence1:829760..830020(+)	partial			WP_003406686.1	F0F1 ATP synthase subunit C	58.1	61.7	94.0
MGA_808	LOCUS_08080	sequence1:844584..845732(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	94.8	63.1	32.6
MGA_811	LOCUS_08110	sequence1:847868..849154(+)	partial			WP_011087566.1	glutaminase A	91.4	65.2	44.8
MGA_848	LOCUS_08470	sequence1:894527..894931(-)	frameshift,internal_stop_codon	895023..895025(-)	894944	WP_014876824.1	hypothetical protein	95.5	57.4	64.1
MGA_851	LOCUS_08500	sequence1:895994..896461(-)	partial			WP_005094018.1	acyl-CoA synthetase	82.6	25.0	70.3
MGA_885	LOCUS_08840	sequence1:935983..936780(+)	partial			WP_003407315.1	lipoarabinomannan carrier protein LprG	74.7	83.5	40.9
MGA_897	LOCUS_08960	sequence1:949570..950349(+)	partial			WP_011728045.1	type VII secretion target	90.3	64.7	44.3
MGA_919	LOCUS_09180	sequence1:974935..978036(+)	partial			WP_003899322.1	Rne/Rng family ribonuclease	61.2	66.2	74.7
MGA_974	LOCUS_09730	sequence1:1034942..1035340(+)	partial			WP_003412293.1	resuscitation-promoting factor protein RpfD	84.1	70.1	52.3
MGA_989	LOCUS_09880	sequence1:1051745..1052380(+)	partial			WP_174519618.1	DUF3060 domain-containing protein	45.0	39.3	47.4
MGA_991	LOCUS_09900	sequence1:1054047..1057571(+)	frameshift		1057706	WP_003899299.1	phenyloxazoline synthase MbtB	96.4	81.5	60.0
MGA_996	LOCUS_09950	sequence1:1063554..1070144(+)	partial			WP_011729886.1	non-ribosomal peptide synthetase	70.9	84.7	59.7
MGA_1027	LOCUS_10260	sequence1:1104869..1105255(-)	partial			WP_003895832.1	hypothetical protein	70.3	83.0	51.6
MGA_1059	LOCUS_10580	sequence1:1139618..1140289(-)	frameshift,internal_stop_codon	1139618..1139620(-),1140505..1140507(-),1139617..1139619(-),1140445..1140447(-),1140439..1140441(-)	1140228,1139847,1139792,1140304,1140435,1140314,1139835,1139614	WP_005097886.1	MPT63 family protein	97.8	63.2	39.5
MGA_1060	LOCUS_10590	sequence1:1140624..1142402(-)	partial			WP_010886110.1	serine/threonine protein kinase PknH	50.2	48.1	51.2
MGA_1071	LOCUS_10700	sequence1:1155225..1156748(+)	frameshift		1156760,1156742	WP_003899240.1	Hsp70 family protein	66.1	57.8	53.2
MGA_1106	LOCUS_11050	sequence1:1192786..1193421(+)	partial			WP_011729718.1	NAD(P)/FAD-dependent oxidoreductase	97.2	39.6	54.1
MGA_1118	LOCUS_11170	sequence1:1204602..1205093(+)	partial			WP_003899112.1	CAP domain-containing protein	86.5	62.4	66.7
MGA_1134	LOCUS_11330	sequence1:1221518..1223287(-)	partial			WP_011729702.1	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	54.8	55.2	79.9
MGA_1144	LOCUS_11420	sequence1:1234237..1234803(+)	frameshift		1234241	WP_003411420.1	glycerate kinase	96.3	50.6	54.7
MGA_1159	LOCUS_11570	sequence1:1249950..1250213(+)	partial			WP_029104374.1	hypothetical protein	71.3	83.8	75.8
MGA_1193	LOCUS_11910	sequence1:1285541..1286593(+)	partial			WP_003411157.1	cell division protein FtsQ	68.6	77.4	71.6
MGA_1199	LOCUS_11970	sequence1:1291175..1291546(+)	partial			WP_011729649.1	hypothetical protein	86.2	66.3	40.2
MGA_1200	LOCUS_11980	sequence1:1291543..1292238(-)	partial			WP_003411129.1	phosphoribosyltransferase family protein	99.6	64.8	61.9
MGA_1226	LOCUS_12240	sequence1:1315093..1315587(-)	partial			WP_003412264.1	Low molecular weight antigen MTB12	58.5	57.7	55.7
MGA_1240	LOCUS_12380	sequence1:1329702..1329905(+)	partial			WP_003899418.1	helix-turn-helix domain-containing protein	91.0	70.9	52.5
MGA_1252	LOCUS_12500	sequence1:1336877..1337242(+)	partial			WP_003898492.1	HNH endonuclease signature motif containing protein	78.5	19.1	57.3
MGA_1256	LOCUS_12540	sequence1:1341304..1341729(-)	partial			WP_014877829.1	hypothetical protein	72.3	54.4	39.0
MGA_1269	LOCUS_12670	sequence1:1355146..1355898(-)	partial			WP_003408099.1	alpha/beta hydrolase family protein	96.0	53.6	61.8
MGA_1273	LOCUS_12710	sequence1:1360029..1360559(+)	partial			WP_011729330.1	translation initiation factor IF-3	86.9	74.3	90.2
MGA_1280	LOCUS_12780	sequence1:1364346..1368467(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	7.1	17.0	35.6
MGA_1337	LOCUS_13340	sequence1:1430858..1431523(-)	frameshift		1431546,1431117,1431781	WP_076611786.1	IS3-like element ISMsm7 family transposase	66.5	37.3	32.4
MGA_1338	LOCUS_13350	sequence1:1431520..1431714(-)	frameshift		1431784,1431552,1431545	WP_225580817.1	IS3 family transposase	84.4	14.0	42.6
MGA_1341	LOCUS_13380	sequence1:1433111..1434787(-)	partial			WP_003911742.1	alpha/beta hydrolase	68.6	59.6	27.4
MGA_1344	LOCUS_13410	sequence1:1436013..1437308(-)	partial			WP_003405629.1	hypothetical protein	31.8	35.9	34.3
MGA_1357	LOCUS_13540	sequence1:1452525..1452659(+)	frameshift		1452478	WP_085129500.1	AAA family ATPase	93.2	5.3	70.7
MGA_1358	LOCUS_13550	sequence1:1452669..1453097(-)	partial			WP_005074775.1	DUF6319 family protein	57.0	71.1	58.0
MGA_1360	LOCUS_13570	sequence1:1453983..1454273(-)	partial			WP_011727903.1	DNA topoisomerase IB	92.7	26.3	48.3
MGA_1373	LOCUS_13700	sequence1:1464877..1466655(-)	partial			WP_011015416.1	cytochrome b/b6 domain-containing protein	53.2	48.2	39.3
MGA_1426	LOCUS_14230	sequence1:1526198..1527040(+)	partial			WP_003409337.1	adhesin Apa	66.8	57.8	71.6
MGA_1443	LOCUS_14400	sequence1:1545882..1546106(-)	partial			WP_003895017.1	(2Fe-2S)-binding protein	71.6	76.8	58.5
MGA_1449	LOCUS_14460	sequence1:1551408..1552481(+)	partial			WP_003899065.1	hypothetical protein	76.2	72.9	30.3
MGA_1493	LOCUS_14900	sequence1:1593819..1594673(+)	partial			WP_013229059.1	NlpC/P60 family protein	41.2	40.8	33.3
MGA_1528	LOCUS_15250	sequence1:1626472..1626639(+)	partial			WP_234794028.1	transposase	94.5	41.6	76.9
MGA_1529	LOCUS_15260	sequence1:1626822..1627328(+)	partial			WP_011268497.1	hypothetical protein	42.9	74.8	51.2
MGA_1530	LOCUS_15270	sequence1:1627442..1627918(+)	partial			WP_013228700.1	nitroreductase family deazaflavin-dependent oxidoreductase	68.4	79.1	39.8
MGA_1535	LOCUS_15320	sequence1:1630332..1631351(-)	partial			WP_037392461.1	AraC family transcriptional regulator	49.9	51.5	32.0
MGA_1539	LOCUS_15360	sequence1:1633036..1634244(-)	partial			WP_005081446.1	oxygenase MpaB family protein	74.6	71.5	37.2
MGA_1543	LOCUS_15400	sequence1:1636574..1637041(+)	partial			WP_003894938.1	DUF732 domain-containing protein	56.8	77.9	68.2
MGA_1552	LOCUS_15490	sequence1:1647806..1648159(+)	partial			WP_011029650.1	DoxX family protein	69.2	59.6	44.4
MGA_1557	LOCUS_15540	sequence1:1650273..1650857(+)	partial			WP_011728927.1	RDD family protein	71.1	84.5	60.1
MGA_1563	LOCUS_15600	sequence1:1654788..1656536(-)	partial			WP_003902238.1	apolipoprotein N-acyltransferase	93.1	61.4	60.5
MGA_1566	LOCUS_15630	sequence1:1658777..1659100(+)	partial			WP_003410610.1	dienelactone hydrolase family protein	66.4	30.0	64.8
MGA_1574	LOCUS_15710	sequence1:1664187..1664906(-)	partial			WP_003895335.1	DUF4333 domain-containing protein	51.9	46.5	65.4
MGA_1583	LOCUS_15800	sequence1:1674195..1674341(-)	partial			WP_003413663.1	YnfA family protein	89.6	39.1	79.1
MGA_1587	LOCUS_15840	sequence1:1677223..1677687(+)	partial			WP_003898948.1	HdeD family acid-resistance protein	95.5	72.3	67.3
MGA_1588	LOCUS_15850	sequence1:1677793..1678344(+)	partial			WP_220096343.1	DUF4190 domain-containing protein	64.5	46.7	41.0
MGA_1599	LOCUS_15960	sequence1:1688321..1689355(-)	frameshift,internal_stop_codon	1688311..1688313(-)	1688467,1688319	WP_013229848.1	cell division protein DivIVA	83.1	65.6	21.8
MGA_1602	LOCUS_15990	sequence1:1691533..1692519(-)	partial			WP_010884002.1	alpha/beta hydrolase fold domain-containing protein	91.5	36.7	42.8
MGA_1637	LOCUS_16340	sequence1:1726383..1726961(-)	partial			WP_003407722.1	signal peptidase II	77.1	73.3	81.8
MGA_1640	LOCUS_16370	sequence1:1729340..1729681(-)	partial			WP_003409188.1	DUF732 domain-containing protein	77.9	73.7	53.4
MGA_1657	LOCUS_16540	sequence1:1751694..1752410(-)	partial			WP_012583273.1	nitroreductase family protein	31.5	45.8	33.8
MGA_1664	LOCUS_16610	sequence1:1765657..1771110(-)	partial			WP_003414837.1	phthiocerol type I polyketide synthase PpsC	82.3	70.0	45.1
MGA_1666	LOCUS_16630	sequence1:1775893..1776687(-)	partial			WP_010908856.1	type I polyketide synthase	100.0	14.1	56.9
MGA_1667	LOCUS_16640	sequence1:1776757..1780284(-)	internal_stop_codon	1776757..1776759(-)		WP_010886158.1	phthiocerol type I polyketide synthase PpsA	98.5	64.1	45.9
MGA_1753	LOCUS_17500	sequence1:1873553..1874899(+)	partial			WP_010950653.1	alpha/beta hydrolase	77.7	51.7	41.8
MGA_1784	LOCUS_17810	sequence1:1905596..1906201(-)	partial			WP_011728767.1	shikimate kinase	83.1	68.4	76.6
MGA_1797	LOCUS_17940	sequence1:1918690..1919661(-)	frameshift		1919675	WP_003894402.1	replication-associated recombination protein A	96.0	69.4	85.8
MGA_1798	LOCUS_17950	sequence1:1920063..1920926(-)	frameshift		1921071	WP_003416075.1	NDMA-dependent alcohol dehydrogenase	99.7	77.7	75.2
MGA_1800	LOCUS_17970	sequence1:1922554..1922982(+)	partial			WP_003409420.1	resuscitation-promoting factor RpfC	78.9	61.9	62.5
MGA_1804	LOCUS_18010	sequence1:1926615..1927172(+)	frameshift		1926618,1927059	WP_011731392.1	IS481-like element ISMsm9 family transposase	81.6	45.8	71.5
MGA_1812	LOCUS_18090	sequence1:1931655..1932212(-)	partial			WP_003413352.1	membrane protein	57.3	68.8	68.9
MGA_1820	LOCUS_18170	sequence1:1941241..1943349(-)	partial			WP_003413385.1	protein translocase subunit SecD	53.4	65.4	78.7
MGA_1830	LOCUS_18270	sequence1:1952899..1953192(-)	frameshift		1953299	WP_011731392.1	IS481-like element ISMsm9 family transposase	100.0	29.7	90.8
MGA_1831	LOCUS_18280	sequence1:1953186..1953677(-)	frameshift		1953299,1953646	WP_011731392.1	IS481-like element ISMsm9 family transposase	77.9	38.5	72.4
MGA_1966	LOCUS_19630	sequence1:2083912..2085159(-)	partial			WP_004193862.1	DNA recombination protein RmuC	87.7	74.7	57.6
MGA_1974	LOCUS_19710	sequence1:2089927..2090943(-)	partial			WP_005112872.1	alpha/beta hydrolase fold domain-containing protein	66.0	65.1	40.0
MGA_1976	LOCUS_19730	sequence1:2092100..2093050(-)	internal_stop_codon	2092100..2092102(-)		WP_013230180.1	SDR family oxidoreductase	93.7	52.8	40.3
MGA_2011	LOCUS_20080	sequence1:2124548..2127331(-)	partial			WP_012296639.1	translation initiation factor IF-2	67.2	68.3	93.4
MGA_2012	LOCUS_20090	sequence1:2127432..2127668(-)	frameshift		2127458	WP_003414510.1	YlxR family protein	84.6	66.7	69.7
MGA_2056	LOCUS_20530	sequence1:2174552..2175046(+)	partial			WP_003414678.1	M23 family metallopeptidase	93.3	61.4	71.2
MGA_2073	LOCUS_20700	sequence1:2187997..2188488(-)	partial			WP_003414731.1	30S ribosomal protein S16	65.6	66.0	87.9
MGA_2080	LOCUS_20770	sequence1:2196010..2196921(-)	partial			WP_003893793.1	[protein-PII] uridylyltransferase	98.7	36.3	54.5
MGA_2084	LOCUS_20810	sequence1:2200579..2201847(-)	partial			WP_003901256.1	PPE family protein	73.5	47.0	43.0
MGA_2124	LOCUS_21210	sequence1:2242953..2243684(-)	frameshift		2242964	WP_003415107.1	DNA-binding protein HupB	44.9	50.9	82.6
MGA_2172	LOCUS_21690	sequence1:2288884..2289444(-)	partial			WP_171463838.1	TetR/AcrR family transcriptional regulator	73.7	67.1	35.7
MGA_2175	LOCUS_21720	sequence1:2292452..2294803(-)	partial			WP_011727252.1	hypothetical protein	10.5	7.0	39.3
MGA_2176	LOCUS_21730	sequence1:2294846..2297335(-)	partial			WP_011727252.1	hypothetical protein	9.9	6.6	39.3
MGA_2194	LOCUS_21910	sequence1:2316919..2317929(+)	partial			WP_013222574.1	LLM class flavin-dependent oxidoreductase	53.9	53.1	29.6
MGA_2202	LOCUS_21990	sequence1:2324382..2325455(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	81.5	49.3	46.0
MGA_2203	LOCUS_22000	sequence1:2325583..2326614(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	87.2	49.3	42.0
MGA_2207	LOCUS_22040	sequence1:2329308..2330693(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	85.5	65.6	40.5
MGA_2244	LOCUS_22410	sequence1:2369830..2370351(+)	partial			WP_172591949.1	L,D-transpeptidase	100.0	65.7	65.9
MGA_2262	LOCUS_22590	sequence1:2387392..2387934(-)	partial			WP_003416124.1	hypothetical protein	38.9	49.0	50.7
MGA_2304	LOCUS_23010	sequence1:2430411..2430971(+)	partial			WP_005088087.1	TetR/AcrR family transcriptional regulator	60.8	56.3	36.7
MGA_2314	LOCUS_23110	sequence1:2444414..2445217(+)	partial			WP_003898602.1	oxygenase MpaB family protein	84.6	69.5	32.2
MGA_2322	LOCUS_23190	sequence1:2453411..2454742(+)	partial			WP_011090968.1	phage/plasmid primase, P4 family	79.0	72.6	23.5
MGA_2365	LOCUS_23620	sequence1:2493230..2493595(-)	partial			WP_003409543.1	anti-sigma factor antagonist	86.8	73.4	48.6
MGA_2366	LOCUS_23630	sequence1:2493918..2494091(-)	partial			WP_003855652.1	CsbD family protein	80.7	74.6	52.0
MGA_2379	LOCUS_23760	sequence1:2506694..2507185(+)	partial			WP_013224372.1	cholesterol catabolism transcriptional regulator KstR	95.1	73.6	26.5
MGA_2427	LOCUS_24240	sequence1:2557237..2557563(+)	partial			WP_003416932.1	Rv3235 family protein	99.1	49.8	48.6
MGA_2446	LOCUS_24430	sequence1:2583961..2585544(+)	frameshift		2585517	WP_019632285.1	adenylate/guanylate cyclase domain-containing protein	93.4	50.8	37.3
MGA_2502	LOCUS_24990	sequence1:2635939..2636145(-)	partial			WP_011727890.1	CDGSH iron-sulfur domain-containing protein	66.2	64.8	73.9
MGA_2507	LOCUS_25040	sequence1:2639967..2640893(-)	frameshift		2639975	WP_013226110.1	HAD-IIIA family hydrolase	97.1	58.9	46.8
MGA_2509	LOCUS_25060	sequence1:2642274..2642753(-)	partial			WP_011730517.1	MPT63 family protein	88.7	40.8	42.3
MGA_2516	LOCUS_25130	sequence1:2648003..2648428(+)	partial			WP_011727905.1	STAS domain-containing protein	67.4	66.9	48.4
MGA_2521	LOCUS_25180	sequence1:2651267..2651794(-)	frameshift		2651798	WP_005111050.1	ornithine decarboxylase	100.0	35.9	63.4
MGA_2522	LOCUS_25190	sequence1:2651676..2652614(-)	frameshift,internal_stop_codon	2652615..2652617(-)	2651798	WP_011726793.1	arginine decarboxylase	87.2	56.1	73.9
MGA_2526	LOCUS_25230	sequence1:2655095..2655631(-)	partial			WP_003406169.1	hemophore-related protein	42.7	69.1	57.9
MGA_2534	LOCUS_25310	sequence1:2662442..2662753(-)	partial			WP_003417162.1	protein UsfY	96.1	72.3	49.5
MGA_2555	LOCUS_25520	sequence1:2686226..2687305(-)	partial			WP_003901256.1	PPE family protein	57.9	31.5	39.4
MGA_2556	LOCUS_25530	sequence1:2687597..2689015(-)	partial			WP_003400998.1	PE-PPE domain-containing protein	63.6	47.1	35.9
MGA_2567	LOCUS_25640	sequence1:2699105..2699680(+)	internal_stop_codon	2699045..2699047(+)		WP_003905037.1	IS110 family transposase	100.0	33.5	77.5
MGA_2593	LOCUS_25900	sequence1:2720954..2722729(+)	partial			WP_012256222.1	ABC transporter ATP-binding protein	42.1	69.8	48.8
MGA_2601	LOCUS_25980	sequence1:2733338..2734834(-)	partial			WP_003901256.1	PPE family protein	91.0	68.1	39.3
MGA_2648	LOCUS_26450	sequence1:2787003..2788529(-)	partial			WP_164922023.1	adenylate/guanylate cyclase domain-containing protein	73.8	67.4	31.4
MGA_2663	LOCUS_26600	sequence1:2803628..2803924(+)	frameshift		2803909	WP_012066685.1	D-threitol dehydrogenase	92.9	36.6	43.0
MGA_2664	LOCUS_26610	sequence1:2803921..2804364(+)	frameshift		2803843,2803910,2803831	WP_011331279.1	SDR family oxidoreductase	98.0	55.2	47.3
MGA_2667	LOCUS_26640	sequence1:2805343..2805861(-)	partial			WP_003896963.1	hypothetical protein	82.6	68.3	68.3
MGA_2680	LOCUS_26770	sequence1:2819164..2819469(-)	partial			WP_003900059.1	WXG100 family type VII secretion target	72.3	73.0	76.7
MGA_2684	LOCUS_26810	sequence1:2824773..2825930(+)	partial			WP_010950890.1	type VII secretion system ESX-4 subunit EccD4	61.8	56.1	29.0
MGA_2686	LOCUS_26830	sequence1:2827177..2828274(-)	partial			WP_003418333.1	type VII secretion system ESX-4 subunit EccB4	60.0	49.8	43.2
MGA_2687	LOCUS_26840	sequence1:2828375..2829088(+)	partial			WP_003418336.1	cutinase family protein	81.0	73.3	64.1
MGA_2690	LOCUS_26870	sequence1:2830638..2831213(-)	partial			WP_011727719.1	50S ribosomal protein L17	63.9	61.3	90.2
MGA_2704	LOCUS_27010	sequence1:2843710..2843937(-)	frameshift		2844112,2843964,2844054	WP_205421581.1	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	92.0	10.8	42.0
MGA_2712	LOCUS_27090	sequence1:2849560..2850591(-)	frameshift,internal_stop_codon	2850588..2850590(-)	2850551	WP_013228884.1	alpha-ketoacid dehydrogenase subunit alpha/beta	90.1	46.6	54.4
MGA_2737	LOCUS_27340	sequence1:2878006..2878551(-)	partial			WP_011727700.1	haloacid dehalogenase	77.3	55.1	42.1
MGA_2751	LOCUS_27480	sequence1:2890725..2891420(-)	partial			WP_003403680.1	30S ribosomal protein S5	74.5	78.2	88.4
MGA_2761	LOCUS_27580	sequence1:2897901..2898218(-)	partial			WP_003898560.1	30S ribosomal protein S17	94.3	74.1	89.0
MGA_2765	LOCUS_27620	sequence1:2899722..2900330(-)	partial			WP_011727673.1	50S ribosomal protein L22	61.4	81.0	72.6
MGA_2788	LOCUS_27850	sequence1:2921530..2921775(+)	partial			WP_162177797.1	SDR family oxidoreductase	86.4	28.0	42.9
MGA_2830	LOCUS_28270	sequence1:2963040..2964539(-)	partial			WP_011338147.1	VWA domain-containing protein	55.1	45.4	31.8
MGA_2862	LOCUS_28590	sequence1:2998092..2998868(+)	partial			WP_011730075.1	membrane protein	78.7	70.0	40.0
MGA_2945	LOCUS_29420	sequence1:3079919..3080275(+)	partial			WP_003404135.1	DUF3073 domain-containing protein	30.5	60.0	86.1
MGA_2956	LOCUS_29530	sequence1:3089852..3091531(+)	partial			WP_010967670.1	nitric oxide reductase activation protein NorD	53.1	47.2	35.5
MGA_2973	LOCUS_29700	sequence1:3106929..3108437(-)	partial			WP_015920568.1	aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha	79.3	72.8	25.6
MGA_2974	LOCUS_29710	sequence1:3108788..3109306(+)	partial			WP_011143585.1	MarR family transcriptional regulator	91.9	72.1	31.2
MGA_2993	LOCUS_29900	sequence1:3129495..3130118(-)	partial			WP_003412695.1	hypothetical protein	80.2	71.0	34.3
MGA_3029	LOCUS_30260	sequence1:3165679..3166344(-)	partial			WP_014878484.1	hypothetical protein	66.5	63.9	61.1
MGA_3060	LOCUS_30570	sequence1:3199007..3199198(-)	partial			WP_003419208.1	gamma carbonic anhydrase family protein	44.4	16.1	75.0
MGA_3078	LOCUS_30750	sequence1:3216669..3218258(+)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	33.8	34.9	64.2
MGA_3095	LOCUS_30920	sequence1:3242994..3244043(-)	partial			WP_003419325.1	fatty acid desaturase	83.1	41.3	51.7
MGA_3116	LOCUS_31130	sequence1:3263317..3263718(+)	partial			WP_005056399.1	heme-binding protein	62.4	70.9	39.8
MGA_3201	LOCUS_31980	sequence1:3365409..3365705(-)	partial			WP_005083510.1	flp pilus-assembly TadE/G-like family protein	80.6	61.2	40.5
MGA_3202	LOCUS_31990	sequence1:3365737..3366084(-)	partial			WP_179948709.1	TadE family type IV pilus minor pilin	71.3	82.0	59.8
MGA_3217	LOCUS_32140	sequence1:3378935..3379519(-)	partial			WP_011731103.1	TlpA disulfide reductase family protein	83.5	74.9	67.9
MGA_3233	LOCUS_32300	sequence1:3391717..3393075(+)	frameshift,internal_stop_codon	3391706..3391708(+)	3391729,3391751	WP_003419768.1	membrane protein	73.2	75.8	48.0
MGA_3240	LOCUS_32370	sequence1:3399032..3399763(-)	partial			WP_003854724.1	HNH endonuclease family protein	75.3	71.3	53.0
MGA_3265	LOCUS_32620	sequence1:3428104..3428547(-)	partial			WP_005088410.1	AMP-binding protein	92.5	24.3	72.1
MGA_3278	LOCUS_32750	sequence1:3443420..3443752(+)	partial			WP_003401357.1	uroporphyrinogen-III synthase	81.8	23.6	67.8
MGA_3300	LOCUS_32970	sequence1:3466254..3469946(+)	frameshift		3469625	WP_003911102.1	DUF3367 domain-containing protein	89.5	77.7	70.8
MGA_3301	LOCUS_32980	sequence1:3469949..3470575(+)	partial			WP_003911102.1	DUF3367 domain-containing protein	97.1	14.4	46.5
MGA_3347	LOCUS_33440	sequence1:3523864..3525012(-)	partial			WP_003908487.1	Ig-like domain-containing protein	72.3	76.7	76.8
MGA_3350	LOCUS_33470	sequence1:3526753..3527322(-)	partial			WP_005063732.1	DUF305 domain-containing protein	75.7	68.9	41.0
MGA_3358	LOCUS_33550	sequence1:3534413..3536326(-)	partial			WP_003414155.1	alpha/beta hydrolase family protein	47.6	51.1	39.7
MGA_3373	LOCUS_33700	sequence1:3550248..3550970(-)	partial			WP_045843938.1	hypothetical protein	62.5	66.7	65.3
MGA_3429	LOCUS_34260	sequence1:3602841..3604286(+)	partial			WP_015776917.1	alkaline phosphatase family protein	46.8	76.0	29.3
MGA_3436	LOCUS_34330	sequence1:3608302..3608670(+)	partial			WP_010950962.1	hypothetical protein	58.2	47.0	54.9
MGA_3438	LOCUS_34350	sequence1:3609646..3610122(+)	partial			WP_010950962.1	hypothetical protein	71.5	76.5	40.3
MGA_3440	LOCUS_34370	sequence1:3611300..3613654(+)	partial			WP_003905192.1	DUF5632 domain-containing protein	27.7	74.4	51.4
MGA_3453	LOCUS_34500	sequence1:3634054..3634866(+)	partial			WP_003420801.1	exported repetitive protein	24.8	26.1	62.2
MGA_3471	LOCUS_34680	sequence1:3650773..3651702(+)	partial			WP_235624060.1	LCP family protein	91.6	66.1	64.3
MGA_3478	LOCUS_34750	sequence1:3656467..3657156(+)	partial			WP_003399745.1	TMEM165/GDT1 family protein	83.8	63.9	59.6
MGA_3513	LOCUS_35100	sequence1:3695878..3696309(+)	partial			WP_003900428.1	hypothetical protein	69.2	66.7	48.1
MGA_3534	LOCUS_35310	sequence1:3720999..3721367(+)	partial			WP_003409065.1	DUF732 domain-containing protein	59.8	67.6	49.3
MGA_3544	LOCUS_35410	sequence1:3729766..3737034(-)	partial			WP_011026868.1	type I polyketide synthase	35.5	38.4	49.5
MGA_3545	LOCUS_35420	sequence1:3737056..3743820(-)	partial			WP_193484145.1	type I polyketide synthase	54.7	60.3	44.3
MGA_3549	LOCUS_35460	sequence1:3747003..3747566(+)	partial			WP_003974031.1	TetR family transcriptional regulator	76.5	66.7	40.4
MGA_3552	LOCUS_35490	sequence1:3750754..3751731(-)	partial			WP_010950605.1	PPE family protein	66.5	32.4	30.0
MGA_3558	LOCUS_35550	sequence1:3757646..3758653(+)	partial			WP_003407378.1	esterase PE16	70.1	45.3	28.9
MGA_3565	LOCUS_35620	sequence1:3765327..3766304(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	85.8	43.7	27.7
MGA_3577	LOCUS_35740	sequence1:3779684..3780073(+)	frameshift		3779660,3779670	WP_003413686.1	ACR3 family arsenite efflux transporter	97.7	25.3	77.8
MGA_3578	LOCUS_35750	sequence1:3780224..3781105(+)	frameshift		3781006	WP_011119453.1	Na+/H+ antiporter NhaA	73.4	49.5	44.5
MGA_3595	LOCUS_35920	sequence1:3807830..3808234(-)	partial			WP_011731617.1	DUF5318 family protein	87.3	72.2	88.9
MGA_3603	LOCUS_36000	sequence1:3815383..3815895(+)	partial			WP_003400476.1	MarR family transcriptional regulator	87.1	70.7	72.3
MGA_3618	LOCUS_36150	sequence1:3833881..3834390(+)	partial			WP_003400148.1	anti-sigma-M factor RsmA	98.2	66.5	43.3
MGA_3627	LOCUS_36240	sequence1:3841620..3842708(-)	partial			WP_011731644.1	membrane protein insertase YidC	74.3	73.3	82.2
MGA_3628	LOCUS_36250	sequence1:3842689..3843003(-)	partial			WP_011731645.1	membrane protein insertion efficiency factor YidD	72.1	65.2	80.0
MGA_3637	LOCUS_36340	sequence1:3853994..3854905(+)	partial			WP_011726605.1	DUF3566 domain-containing protein	49.8	65.4	62.4
MGA_3651	LOCUS_36480	sequence1:3868713..3869435(-)	frameshift		3869434,3869539	WP_209912946.1	IS481 family transposase	92.5	55.4	70.7
MGA_3670	LOCUS_36670	sequence1:3883842..3885098(+)	partial			WP_010950329.1	DUF5631 domain-containing protein	48.6	54.8	55.7
MGA_3674	LOCUS_36710	sequence1:3888938..3890617(-)	partial			WP_003400012.1	type VII secretion system ESX-2 serine protease mycosin MycP2	56.4	57.5	76.6
MGA_3684	LOCUS_36810	sequence1:3902701..3903984(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	71.7	52.0	40.2
MGA_3693	LOCUS_36900	sequence1:3920185..3920733(+)	partial			WP_003412695.1	hypothetical protein	95.6	73.9	40.4
MGA_3696	LOCUS_36930	sequence1:3928086..3936545(+)	frameshift		3928066,3928099,3928102,3928108,3928048,3928051,3928117,3928054,3928120,3928090,3928060,3928093	WP_010950546.1	PE family protein	17.2	52.5	20.2
MGA_3700	LOCUS_36970	sequence1:3940028..3945673(+)	partial			WP_011727252.1	hypothetical protein	14.1	19.5	24.8
MGA_3725	LOCUS_37220	sequence1:3988320..3988469(-)	partial			WP_011730739.1	hypothetical protein	93.9	74.2	78.3
MGA_3741	LOCUS_37380	sequence1:4001324..4001581(-)	partial			WP_003897753.1	DUF1049 domain-containing protein	94.1	66.1	62.5
MGA_3751	LOCUS_37480	sequence1:4009466..4010068(-)	partial			WP_005061338.1	DUF4333 domain-containing protein	63.5	52.8	44.9
MGA_3757	LOCUS_37540	sequence1:4016042..4016176(-)	partial			WP_015776783.1	hypothetical protein	90.9	74.1	65.0
MGA_3766	LOCUS_37630	sequence1:4024807..4025190(-)	partial			WP_010950435.1	DUF4226 domain-containing protein	90.6	41.5	39.3
MGA_3767	LOCUS_37640	sequence1:4025221..4025937(-)	partial			WP_003420421.1	lipid uptake coordinator LucA	68.1	63.8	54.9
MGA_3829	LOCUS_38260	sequence1:4087955..4088485(+)	partial			WP_003412264.1	Low molecular weight antigen MTB12	68.2	69.0	32.5
MGA_3833	LOCUS_38300	sequence1:4093745..4094917(+)	partial			WP_011123362.1	restriction endonuclease subunit S	52.3	50.9	39.2
MGA_3835	LOCUS_38320	sequence1:4097859..4098200(+)	partial			WP_011038030.1	SprT family zinc-dependent metalloprotease	53.1	24.2	46.7
MGA_3848	LOCUS_38450	sequence1:4105309..4106760(+)	frameshift,internal_stop_codon	4105273..4105275(+)	4105344,4105187,4105245	WP_011727115.1	hypothetical protein	72.7	59.8	41.9
MGA_3849	LOCUS_38460	sequence1:4106826..4108556(+)	frameshift,internal_stop_codon	4108586..4108588(+)	4108657,4108500,4108558	WP_011727115.1	hypothetical protein	61.8	58.7	43.3
MGA_3879	LOCUS_38760	sequence1:4137711..4138958(+)	partial			WP_010950639.1	PecA family PE domain-processing aspartic protease	74.2	53.2	40.8
MGA_3924	LOCUS_39210	sequence1:4183152..4183622(-)	partial			WP_011727213.1	NAD(P)/FAD-dependent oxidoreductase	78.2	33.8	55.1
MGA_3930	LOCUS_39270	sequence1:4190526..4190720(+)	partial			WP_003407710.1	Rv1535 family protein	79.7	65.4	49.0
MGA_3985	LOCUS_39820	sequence1:4246966..4247367(+)	partial			WP_003402344.1	DUF2599 domain-containing protein	77.4	69.6	59.2
MGA_3993	LOCUS_39900	sequence1:4253579..4253899(+)	partial			WP_003973252.1	rhodanese-like domain-containing protein	94.3	69.7	41.2
MGA_3994	LOCUS_39910	sequence1:4253937..4254710(-)	partial			WP_003898475.1	DUF2993 domain-containing protein	90.7	65.2	48.9
MGA_4009	LOCUS_40060	sequence1:4268434..4275561(+)	partial			WP_011142823.1	type I polyketide synthase	37.3	73.5	52.5
MGA_4010	LOCUS_40070	sequence1:4275558..4280978(+)	partial			WP_011205656.1	non-ribosomal peptide synthetase	58.0	32.4	41.6
MGA_4017	LOCUS_40140	sequence1:4287938..4290469(-)	partial			WP_048064397.1	ABC transporter permease	34.4	79.7	23.1
MGA_4025	LOCUS_40220	sequence1:4297334..4297492(+)	partial			WP_003402437.1	DNA-binding protein	100.0	66.7	94.2
MGA_4037	LOCUS_40340	sequence1:4308050..4310245(-)	partial			WP_013224247.1	cellulase family glycosylhydrolase	35.6	48.7	28.3
MGA_4044	LOCUS_40410	sequence1:4316394..4317824(+)	partial			WP_003405368.1	PPE family protein	69.7	84.9	34.5
MGA_4074	LOCUS_40710	sequence1:4345755..4346168(-)	frameshift,internal_stop_codon	4346171..4346173(-)	4346140	WP_003419293.1	3-oxo-23,24-bisnorchol-4,17(20)-dien-22-oyl-CoA hydratase subunit alpha ChsH2	83.9	36.7	47.8
MGA_4075	LOCUS_40720	sequence1:4346171..4346719(-)	frameshift,internal_stop_codon	4346171..4346173(-)	4346146	WP_013224382.1	OB-fold domain-containing protein	84.6	48.7	40.3
MGA_4099	LOCUS_40960	sequence1:4373046..4374494(-)	partial			WP_013228957.1	AMP-binding protein	90.9	43.9	37.2
MGA_4102	LOCUS_40990	sequence1:4376025..4376795(-)	frameshift		4376845	WP_011731379.1	acyl-CoA dehydrogenase family protein	99.6	64.4	42.7
MGA_4103	LOCUS_41000	sequence1:4376792..4377268(-)	frameshift		4376845	WP_013225678.1	acyl-CoA dehydrogenase family protein	77.8	29.5	36.5
MGA_4105	LOCUS_41020	sequence1:4378079..4378618(-)	frameshift		4378716	WP_013228924.1	MaoC family dehydratase N-terminal domain-containing protein	98.3	41.8	46.0
MGA_4107	LOCUS_41040	sequence1:4378821..4379327(-)	frameshift		4379024,4378718	WP_013228924.1	MaoC family dehydratase N-terminal domain-containing protein	59.5	24.1	45.1
MGA_4108	LOCUS_41050	sequence1:4379809..4380246(+)	partial			WP_011227837.1	enoyl-CoA hydratase-related protein	97.2	55.5	43.3
MGA_4116	LOCUS_41130	sequence1:4387659..4388465(+)	frameshift		4388297	WP_038966058.1	hydroxyacid dehydrogenase	79.9	60.7	41.2
MGA_4117	LOCUS_41140	sequence1:4388437..4388712(+)	frameshift		4388297	WP_038966058.1	hydroxyacid dehydrogenase	80.2	20.9	53.4
MGA_4126	LOCUS_41230	sequence1:4394823..4395419(+)	frameshift		4395649,4395276,4395378,4395165,4395288,4395609,4394877,4395390	WP_011730214.1	arginine--tRNA ligase	81.8	29.6	64.0