# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_4	LOCUS_00030	sequence1:3042..5630(-)	frameshift,internal_stop_codon	4905..4907(-),2847..2849(-),4757..4759(-),5224..5226(-),5078..5080(-),5885..5887(-),5074..5076(-),3041..3043(-),2845..2847(-),5735..5737(-),3042..3044(-),5626..5628(-),5734..5736(-),5225..5227(-)	5250,3202,3205,3206,3209,3082,3212,3088,3473,3221,3095,3096,5143,3098,3227,3103,3104,3107,5541,3494,5799,3117,3245,5166,5168,5559,5688,5565,5571,5574,2892,4688,5457,5456,5205,5463,5466,5595,5469,5730,5220,5226,3182,4591,3440,5106,2804,3448,3199	WP_010886165.1	PE family protein	14.2	7.7	53.3
MGA_6	LOCUS_00050	sequence1:7072..8625(-)	frameshift		7428,7293,7262,7391	WP_010950464.1	PE family protein	25.1	21.4	49.2
MGA_18	LOCUS_00170	sequence1:20186..21445(-)	partial			WP_010950597.1	PE family protein	32.2	21.2	54.1
MGA_19	LOCUS_00180	sequence1:21554..22984(-)	partial			WP_003905649.1	PE family protein	26.5	19.3	46.0
MGA_20	LOCUS_00190	sequence1:23040..24488(-)	partial			WP_003905649.1	PE family protein	26.6	19.6	52.3
MGA_21	LOCUS_00200	sequence1:24801..26138(-)	partial			WP_003911027.1	PE family protein	25.8	26.2	52.2
MGA_22	LOCUS_00210	sequence1:26576..27634(-)	partial			WP_010886177.1	PE family protein	34.1	21.7	55.1
MGA_43	LOCUS_00420	sequence1:49104..50606(+)	partial			WP_011727070.1	PPE family protein	33.0	31.7	59.6
MGA_44	LOCUS_00430	sequence1:50629..52551(+)	partial			WP_010950840.1	PPE family protein	74.1	59.0	32.5
MGA_58	LOCUS_00570	sequence1:69435..70568(+)	frameshift		70289,70145,70292,70296,70251,70301	WP_010950451.1	PE family protein	32.4	14.7	46.7
MGA_83	LOCUS_00820	sequence1:95372..95695(-)	partial			WP_005093297.1	hypothetical protein	44.9	56.6	54.2
MGA_89	LOCUS_00880	sequence1:99991..101709(+)	partial			WP_003401347.1	PPE family protein	35.5	36.2	55.7
MGA_91	LOCUS_00900	sequence1:102754..104241(+)	partial			WP_011727070.1	PPE family protein	36.0	34.0	64.0
MGA_114	LOCUS_01130	sequence1:128445..130376(+)	partial			WP_003900119.1	Hsp70 family protein	72.6	75.8	66.5
MGA_115	LOCUS_01140	sequence1:130460..131830(+)	partial			WP_011727115.1	hypothetical protein	52.9	42.5	50.0
MGA_128	LOCUS_01270	sequence1:142040..143698(-)	partial			WP_011727115.1	hypothetical protein	55.8	59.4	40.4
MGA_132	LOCUS_01310	sequence1:148070..149593(-)	partial			WP_097941806.1	LuxR C-terminal-related transcriptional regulator	74.8	50.4	63.9
MGA_150	LOCUS_01490	sequence1:162963..163601(-)	frameshift		162965	WP_003417421.1	PDZ-interacting protease regulator Ppr1	60.4	47.0	41.7
MGA_152	LOCUS_01510	sequence1:164551..165393(+)	partial			WP_164928758.1	carotenoid biosynthesis protein	71.1	67.7	31.4
MGA_169	LOCUS_01680	sequence1:178400..180355(+)	partial			WP_011727115.1	hypothetical protein	68.2	80.1	36.4
MGA_170	LOCUS_01690	sequence1:180472..181887(+)	partial			WP_011727115.1	hypothetical protein	71.1	59.1	42.4
MGA_171	LOCUS_01700	sequence1:182012..183460(+)	partial			WP_011727115.1	hypothetical protein	68.9	57.5	44.2
MGA_180	LOCUS_01790	sequence1:190939..191262(+)	partial			WP_009939865.1	PE family protein	89.7	18.0	55.2
MGA_205	LOCUS_02040	sequence1:218648..219553(-)	frameshift		219265,218818,218947,218950,219211,218931,218932,218842,219003	WP_010886177.1	PE family protein	49.8	25.7	47.3
MGA_208	LOCUS_02070	sequence1:222671..224545(+)	partial			WP_003911027.1	PE family protein	16.3	23.2	49.0
MGA_226	LOCUS_02250	sequence1:242976..244031(-)	partial			WP_048066275.1	PKD domain-containing protein	72.9	15.5	47.3
MGA_245	LOCUS_02440	sequence1:265068..267020(-)	partial			WP_005112392.1	serine/threonine-protein kinase	43.8	47.5	52.4
MGA_248	LOCUS_02470	sequence1:269542..270444(-)	partial			WP_010950912.1	sensor domain-containing protein	62.3	80.2	33.5
MGA_250	LOCUS_02490	sequence1:271267..272064(-)	partial			WP_003899735.1	FHA domain-containing protein	87.9	59.2	51.3
MGA_251	LOCUS_02500	sequence1:272263..272637(+)	partial			WP_005061338.1	DUF4333 domain-containing protein	97.6	52.3	39.4
MGA_277	LOCUS_02760	sequence1:297753..298079(+)	partial			WP_013228394.1	CD225/dispanin family protein	59.3	55.7	59.4
MGA_282	LOCUS_02810	sequence1:303206..303496(+)	partial			WP_005114615.1	DUF4190 domain-containing protein	79.2	24.7	46.1
MGA_293	LOCUS_02920	sequence1:311167..315042(+)	partial			WP_013227688.1	SpoIIE family protein phosphatase	55.8	53.3	40.8
MGA_296	LOCUS_02950	sequence1:319922..320266(-)	partial			WP_003402171.1	hypothetical protein	96.5	74.8	53.6
MGA_298	LOCUS_02970	sequence1:321375..321992(-)	partial			WP_003402179.1	hypothetical protein	80.5	57.3	62.4
MGA_305	LOCUS_03040	sequence1:326201..326941(-)	partial			WP_013222956.1	class I SAM-dependent methyltransferase	79.7	65.2	38.3
MGA_318	LOCUS_03170	sequence1:338264..339325(-)	partial			WP_013095741.1	esterase FrsA	80.7	72.9	26.7
MGA_336	LOCUS_03350	sequence1:355666..355983(+)	partial			WP_099318959.1	PE family protein	96.2	22.1	53.5
MGA_360	LOCUS_03590	sequence1:381258..382268(-)	partial			WP_003402327.1	hypothetical protein	33.6	69.1	71.7
MGA_420	LOCUS_04190	sequence1:437060..437344(+)	partial			WP_003402853.1	DUF4229 domain-containing protein	77.7	69.5	69.9
MGA_426	LOCUS_04250	sequence1:443036..445222(+)	partial			WP_003911223.1	hypothetical protein	57.1	73.7	39.8
MGA_438	LOCUS_04370	sequence1:454705..455370(-)	partial			WP_010908794.1	hypothetical protein	68.3	73.9	62.3
MGA_448	LOCUS_04470	sequence1:465380..465859(-)	partial			WP_003243994.1	MarR family transcriptional regulator	71.1	82.5	32.2
MGA_474	LOCUS_04730	sequence1:489731..490189(-)	partial			WP_010886147.1	PE family protein	46.7	4.3	56.3
MGA_496	LOCUS_04950	sequence1:516723..517160(+)	partial			WP_011089982.1	MaoC family dehydratase N-terminal domain-containing protein	52.4	31.1	37.5
MGA_501	LOCUS_05000	sequence1:522032..523483(+)	frameshift		523240,523258,523261,523246	WP_010886106.1	PE family protein	31.3	31.1	37.7
MGA_503	LOCUS_05020	sequence1:523996..525408(+)	partial			WP_010886100.1	PE domain-containing protein	35.7	33.7	49.1
MGA_561	LOCUS_05600	sequence1:595234..597576(+)	partial			WP_003416064.1	serine/threonine protein kinase PknK	98.7	69.0	55.2
MGA_582	LOCUS_05810	sequence1:615221..615463(+)	partial			WP_003403486.1	mycofactocin biosynthesis chaperone MftB	98.8	72.5	81.0
MGA_588	LOCUS_05870	sequence1:621639..622460(-)	partial			WP_099318959.1	PE family protein	37.0	22.1	53.5
MGA_598	LOCUS_05970	sequence1:629075..629698(+)	partial			WP_010908581.1	50S ribosomal protein L22	58.9	69.7	85.2
MGA_629	LOCUS_06280	sequence1:652289..652951(-)	partial			WP_011836432.1	class I SAM-dependent methyltransferase	64.1	54.0	32.4
MGA_630	LOCUS_06290	sequence1:653029..653898(+)	partial			WP_011089700.1	AraC family transcriptional regulator	31.8	29.9	42.4
MGA_638	LOCUS_06370	sequence1:659307..660389(-)	frameshift,internal_stop_codon	659169..659171(-),659500..659502(-)	659360,659363,659877,659879,659818,659372,659408,659186,659478,659358,659359	WP_009935618.1	PPE family protein	95.3	34.5	39.4
MGA_663	LOCUS_06620	sequence1:681024..682154(+)	partial			WP_010886177.1	PE family protein	34.0	21.9	46.1
MGA_671	LOCUS_06700	sequence1:689734..691653(+)	partial			WP_011727491.1	bifunctional serine/threonine-protein kinase/transporter substrate-binding domain-containing protein	42.7	43.6	57.1
MGA_677	LOCUS_06760	sequence1:695031..695645(+)	partial			WP_010908642.1	50S ribosomal protein L17	64.2	77.1	93.9
MGA_718	LOCUS_07170	sequence1:741560..743062(+)	partial			WP_208267418.1	adenylate/guanylate cyclase domain-containing protein	70.4	64.1	31.2
MGA_728	LOCUS_07270	sequence1:748895..749701(+)	partial			WP_003418011.1	anti-sigma D factor RsdA	75.7	67.9	67.5
MGA_752	LOCUS_07510	sequence1:779691..780428(+)	partial			WP_003906993.1	PPE family protein	62.9	26.1	46.8
MGA_762	LOCUS_07590	sequence1:790751..792535(-)	frameshift,internal_stop_codon	790566..790568(-),792589..792591(-),790638..790640(-),792794..792796(-)	792576,790918,790921,790923,791376,790929,790935,790937,790942,790944,790945,790948,792167,790951,790954,790507,790706,790963,792185,792188,790975	WP_010886165.1	PE family protein	19.4	7.8	50.4
MGA_784	LOCUS_07810	sequence1:816335..817009(+)	partial			WP_003972011.1	alpha/beta hydrolase	61.2	50.6	35.5
MGA_804	LOCUS_08010	sequence1:837377..837976(-)	partial			WP_003905037.1	IS110 family transposase	99.0	34.6	81.2
MGA_805	LOCUS_08020	sequence1:838114..840675(+)	partial			WP_014878013.1	serine/threonine-protein kinase	32.7	53.3	49.5
MGA_816	LOCUS_08130	sequence1:849903..851393(+)	partial			WP_010948252.1	hypothetical protein	31.7	84.1	38.6
MGA_845	LOCUS_08410	sequence1:879765..880178(-)	partial			WP_011727905.1	STAS domain-containing protein	79.6	73.9	45.0
MGA_851	LOCUS_08470	sequence1:884344..884568(-)	partial			WP_010886160.1	acyl-CoA carboxylase subunit epsilon	91.9	38.4	57.4
MGA_900	LOCUS_08960	sequence1:934002..935012(+)	partial			WP_037392461.1	AraC family transcriptional regulator	73.5	76.2	33.1
MGA_918	LOCUS_09140	sequence1:955893..957659(-)	partial			WP_164920852.1	ABC transporter ATP-binding protein/permease	82.1	50.3	36.3
MGA_923	LOCUS_09190	sequence1:960907..961257(-)	frameshift		961487	WP_003416932.1	Rv3235 family protein	100.0	52.6	72.4
MGA_952	LOCUS_09480	sequence1:987851..988453(-)	partial			WP_005112616.1	ABC-F family ATP-binding cassette domain-containing protein	57.0	60.6	44.7
MGA_959	LOCUS_09550	sequence1:995103..995618(+)	partial			WP_011029402.1	HdeD family acid-resistance protein	98.2	73.5	51.8
MGA_1000	LOCUS_09960	sequence1:1038104..1038499(+)	partial			WP_011729104.1	cupin domain-containing protein	95.4	71.4	68.0
MGA_1002	LOCUS_09980	sequence1:1039636..1040340(-)	partial			WP_011729362.1	alpha/beta fold hydrolase	49.6	53.8	35.8
MGA_1011	LOCUS_10070	sequence1:1048032..1049930(+)	partial			WP_010886084.1	PE family protein	21.8	17.5	52.2
MGA_1012	LOCUS_10080	sequence1:1049960..1050160(+)	partial			WP_003892088.1	membrane protein	77.3	73.9	56.9
MGA_1015	LOCUS_10110	sequence1:1053320..1053619(+)	frameshift		1053290	WP_013531947.1	molybdopterin-binding protein	78.8	30.4	45.0
MGA_1036	LOCUS_10320	sequence1:1074185..1075000(+)	partial			WP_003897943.1	hypothetical protein	72.7	79.1	37.6
MGA_1038	LOCUS_10340	sequence1:1075579..1075866(+)	partial			WP_011731338.1	cytochrome C oxidase subunit IV family protein	72.6	72.2	41.4
MGA_1040	LOCUS_10360	sequence1:1076705..1077682(-)	partial			WP_162139596.1	peptidylprolyl isomerase	17.5	19.4	59.6
MGA_1049	LOCUS_10450	sequence1:1087323..1087568(-)	frameshift		1087623	WP_011731275.1	superoxide dismutase	97.5	38.2	81.0
MGA_1050	LOCUS_10460	sequence1:1087555..1087947(-)	frameshift		1087626	WP_005062831.1	superoxide dismutase	82.3	51.7	90.7
MGA_1051	LOCUS_10470	sequence1:1087983..1088687(-)	partial			WP_037393266.1	SDR family oxidoreductase	70.1	68.4	38.7
MGA_1063	LOCUS_10590	sequence1:1098508..1099431(-)	partial			WP_011141852.1	chemotaxis protein CheB	74.9	19.3	35.3
MGA_1064	LOCUS_10600	sequence1:1099617..1100780(+)	partial			WP_010907995.1	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	57.9	63.0	32.0
MGA_1065	LOCUS_10610	sequence1:1100842..1101888(+)	partial			WP_011728263.1	AraC family transcriptional regulator	47.4	47.6	33.9
MGA_1067	LOCUS_10630	sequence1:1102872..1103297(+)	partial			WP_003402807.1	STAS domain-containing protein	65.2	58.2	37.0
MGA_1080	LOCUS_10760	sequence1:1113755..1114624(+)	partial			WP_014878395.1	SDR family oxidoreductase	81.0	72.6	30.6
MGA_1112	LOCUS_11080	sequence1:1146939..1147949(+)	partial			WP_011021601.1	YncE family protein	86.0	67.0	40.4
MGA_1128	LOCUS_11240	sequence1:1163852..1164250(+)	partial			WP_011088962.1	group III truncated hemoglobin	78.8	63.6	34.6
MGA_1136	LOCUS_11320	sequence1:1171131..1171601(+)	partial			WP_003416124.1	hypothetical protein	44.2	49.0	62.0
MGA_1149	LOCUS_11450	sequence1:1185091..1185852(+)	partial			WP_177169225.1	RNA polymerase sigma factor	87.0	39.5	26.6
MGA_1150	LOCUS_11460	sequence1:1185869..1186492(-)	partial			WP_003821296.1	FHA domain-containing protein	37.7	52.4	43.6
MGA_1152	LOCUS_11480	sequence1:1188772..1190070(-)	partial			WP_012256527.1	AarF/ABC1/UbiB kinase family protein	82.6	66.4	31.9
MGA_1160	LOCUS_11560	sequence1:1196570..1199176(-)	partial			WP_011086134.1	xanthine dehydrogenase family protein molybdopterin-binding subunit	65.3	70.0	34.0
MGA_1182	LOCUS_11780	sequence1:1221278..1222552(+)	partial			WP_038967354.1	amidohydrolase family protein	60.6	65.4	27.9
MGA_1186	LOCUS_11820	sequence1:1225232..1226446(+)	partial			WP_013225697.1	amidohydrolase family protein	70.3	71.3	30.0
MGA_1202	LOCUS_11980	sequence1:1242018..1242782(+)	partial			WP_005094761.1	hypothetical protein	59.8	56.7	51.9
MGA_1205	LOCUS_12010	sequence1:1244169..1244855(+)	partial			WP_011029918.1	class I SAM-dependent methyltransferase	82.5	56.2	40.5
MGA_1207	LOCUS_12030	sequence1:1246553..1248313(+)	partial			WP_011144393.1	potassium channel protein	52.2	44.0	30.8
MGA_1220	LOCUS_12160	sequence1:1260068..1260514(+)	partial			WP_013229702.1	SRPBCC family protein	68.9	63.9	33.0
MGA_1227	LOCUS_12230	sequence1:1265468..1266661(-)	partial			WP_003895344.1	PrsW family intramembrane metalloprotease	61.0	68.9	28.6
MGA_1230	LOCUS_12260	sequence1:1268306..1269187(+)	partial			WP_013229059.1	NlpC/P60 family protein	36.9	38.1	34.1
MGA_1234	LOCUS_12300	sequence1:1270918..1271562(-)	partial			WP_003917120.1	DUF732 domain-containing protein	67.8	81.2	36.1
MGA_1253	LOCUS_12490	sequence1:1288013..1289194(-)	partial			WP_011028858.1	site-specific integrase	58.8	59.4	27.5
MGA_1258	LOCUS_12540	sequence1:1292334..1292855(+)	frameshift		1292834	WP_011730637.1	diacylglycerol kinase	50.3	24.3	47.1
MGA_1266	LOCUS_12620	sequence1:1299720..1300481(-)	partial			WP_011731410.1	SDR family NAD(P)-dependent oxidoreductase	74.3	74.3	34.0
MGA_1279	LOCUS_12750	sequence1:1311478..1311921(+)	partial			WP_013225198.1	MarR family transcriptional regulator	70.7	65.0	45.2
MGA_1295	LOCUS_12910	sequence1:1329198..1329389(+)	partial			WP_013228958.1	hypothetical protein	96.8	61.2	47.6
MGA_1309	LOCUS_13050	sequence1:1342331..1343128(+)	partial			WP_038965382.1	SDR family NAD(P)-dependent oxidoreductase	74.3	76.1	38.4
MGA_1318	LOCUS_13140	sequence1:1351995..1352846(-)	partial			WP_003405603.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	60.1	67.7	78.2
MGA_1338	LOCUS_13340	sequence1:1375235..1377466(-)	partial			WP_011103760.1	ATP-binding protein	65.9	66.2	35.4
MGA_1353	LOCUS_13490	sequence1:1390714..1391256(+)	frameshift		1390626,1390666	WP_005057745.1	MspA family porin	98.9	74.1	49.2
MGA_1367	LOCUS_13630	sequence1:1406599..1406958(-)	partial			WP_013228942.1	OB-fold domain-containing protein	88.2	19.6	45.8
MGA_1368	LOCUS_13640	sequence1:1407021..1408214(+)	partial			WP_011730106.1	OB-fold domain-containing protein	98.7	69.3	43.4
MGA_1380	LOCUS_13760	sequence1:1418361..1421708(+)	partial			WP_003914457.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	48.3	74.2	97.4
MGA_1422	LOCUS_14180	sequence1:1462401..1462793(+)	partial			WP_029104597.1	hypothetical protein	93.1	55.3	53.7
MGA_1445	LOCUS_14410	sequence1:1486548..1486823(-)	frameshift		1486825	WP_005079442.1	hypothetical protein	97.8	49.2	48.3
MGA_1446	LOCUS_14420	sequence1:1486823..1487092(-)	frameshift		1486825	WP_005079442.1	hypothetical protein	94.4	45.9	52.4
MGA_1453	LOCUS_14490	sequence1:1493501..1494436(+)	partial			WP_011726641.1	MinD/ParA family protein	97.4	65.8	38.5
MGA_1475	LOCUS_14710	sequence1:1516619..1517278(+)	internal_stop_codon	1517276..1517278(+)		WP_003415107.1	DNA-binding protein HupB	48.4	49.5	97.2
MGA_1515	LOCUS_15110	sequence1:1557627..1559255(-)	partial			WP_010950346.1	PE family protein	23.6	23.6	69.5
MGA_1535	LOCUS_15310	sequence1:1585473..1586036(+)	partial			WP_003414731.1	30S ribosomal protein S16	61.0	70.4	85.1
MGA_1544	LOCUS_15400	sequence1:1591131..1591886(-)	partial			WP_013227040.1	GAF and ANTAR domain-containing protein	75.3	74.1	34.3
MGA_1555	LOCUS_15510	sequence1:1600692..1601183(-)	partial			WP_003414678.1	M23 family metallopeptidase	96.9	63.5	81.0
MGA_1560	LOCUS_15560	sequence1:1605246..1605881(+)	partial			WP_011727224.1	MPT63 family protein	74.4	45.2	34.6
MGA_1603	LOCUS_15990	sequence1:1649459..1652215(+)	partial			WP_003899505.1	translation initiation factor IF-2	67.9	69.2	92.0
MGA_1635	LOCUS_16310	sequence1:1683442..1683771(-)	partial			WP_005092091.1	HNH endonuclease signature motif containing protein	77.1	19.2	68.2
MGA_1645	LOCUS_16410	sequence1:1689929..1690846(-)	partial			WP_011029372.1	bifunctional DNA primase/polymerase	51.5	54.6	30.9
MGA_1652	LOCUS_16480	sequence1:1695533..1695778(+)	partial			WP_003414091.1	flavodoxin family protein	87.7	47.3	88.7
MGA_1655	LOCUS_16510	sequence1:1696489..1696719(+)	partial			WP_003414091.1	flavodoxin family protein	93.4	47.3	87.3
MGA_1671	LOCUS_16670	sequence1:1711561..1712232(+)	partial			WP_005093086.1	DivIVA domain-containing protein	93.7	67.5	36.8
MGA_1712	LOCUS_17080	sequence1:1759110..1759460(+)	partial			WP_010908067.1	LysM peptidoglycan-binding domain-containing protein	100.0	71.3	59.8
MGA_1729	LOCUS_17250	sequence1:1771812..1773059(+)	partial			WP_010950393.1	PPE family protein	40.7	38.4	44.1
MGA_1730	LOCUS_17260	sequence1:1773061..1774065(-)	partial			WP_003404782.1	serine/threonine protein kinase PknD	75.4	39.2	51.3
MGA_1731	LOCUS_17270	sequence1:1774185..1774526(-)	partial			WP_003417745.1	DUF732 domain-containing protein	71.7	62.0	39.5
MGA_1776	LOCUS_17720	sequence1:1813584..1814498(-)	frameshift		1814596	WP_003400562.1	glycoside hydrolase family 6 protein	97.7	79.2	70.1
MGA_1786	LOCUS_17820	sequence1:1820245..1820601(-)	partial			WP_012804326.1	ISL3 family transposase	83.1	23.2	36.3
MGA_1787	LOCUS_17830	sequence1:1820651..1821244(-)	frameshift		1821315	WP_011727958.1	IS21-like element helper ATPase IstB	100.0	69.4	89.3
MGA_1788	LOCUS_17840	sequence1:1821497..1822270(-)	frameshift		1822287	WP_011727957.1	DDE-type integrase/transposase/recombinase	100.0	56.7	78.2
MGA_1789	LOCUS_17850	sequence1:1822234..1822857(-)	frameshift		1822287	WP_011727957.1	DDE-type integrase/transposase/recombinase	91.8	41.9	82.1
MGA_1790	LOCUS_17860	sequence1:1823038..1823847(-)	partial			WP_141270575.1	ISL3-like element ISAar39 family transposase	69.1	43.3	27.8
MGA_1792	LOCUS_17880	sequence1:1824310..1825236(+)	frameshift		1824280	WP_087902221.1	IS3-like element IS987 family transposase	90.9	67.1	50.9
MGA_1794	LOCUS_17900	sequence1:1826974..1827198(+)	partial			WP_003899418.1	helix-turn-helix domain-containing protein	77.0	66.3	71.9
MGA_1796	LOCUS_17920	sequence1:1827581..1828945(+)	partial			WP_003899416.1	DUF3631 domain-containing protein	79.5	74.9	63.5
MGA_1828	LOCUS_18240	sequence1:1852280..1853311(+)	partial			WP_003400393.1	C40 family peptidase	30.3	35.2	53.8
MGA_1832	LOCUS_18280	sequence1:1859514..1860671(+)	partial			WP_003409061.1	PPE family protein	81.3	70.8	36.9
MGA_1836	LOCUS_18320	sequence1:1863168..1864070(+)	partial			WP_013222435.1	MinD/ParA family protein	98.0	66.1	35.4
MGA_1838	LOCUS_18340	sequence1:1865638..1867326(+)	partial			WP_003408854.1	type VII secretion system ESX-5 serine protease mycosin MycP5	56.8	54.2	61.2
MGA_1839	LOCUS_18350	sequence1:1867323..1868915(+)	partial			WP_003408859.1	type VII secretion system ESX-5 subunit EccE5	55.1	76.4	34.7
MGA_1849	LOCUS_18450	sequence1:1887377..1887625(+)	partial			WP_000218177.1	ATP-dependent helicase	93.9	11.1	43.6
MGA_1869	LOCUS_18650	sequence1:1905219..1911053(-)	partial			WP_012296243.1	MobF family relaxase	43.0	69.2	29.6
MGA_1877	LOCUS_18730	sequence1:1917303..1917770(-)	partial			WP_011023092.1	DUF488 family protein	92.9	50.2	30.3
MGA_1886	LOCUS_18820	sequence1:1924354..1925970(-)	partial			WP_012257307.1	ParB/RepB/Spo0J family partition protein	27.1	38.3	35.1
MGA_1897	LOCUS_18930	sequence1:1939607..1940275(+)	partial			WP_003407152.1	membrane protein	67.6	68.2	59.3
MGA_1932	LOCUS_19280	sequence1:1980122..1981852(-)	partial			WP_110170977.1	VWA domain-containing protein	49.3	43.8	31.1
MGA_1937	LOCUS_19330	sequence1:1985281..1985700(+)	partial			WP_003896200.1	mycofactocin-coupled SDR family oxidoreductase	89.9	42.1	46.8
MGA_1940	LOCUS_19360	sequence1:1988906..1989085(+)	frameshift		1988880,1989139,1989076,1989287	WP_005110054.1	MMPL family transporter	98.3	7.9	56.9
MGA_1941	LOCUS_19370	sequence1:1989331..1989582(+)	frameshift		1989136,1989076,1989254	WP_011031731.1	MMPL family transporter	61.4	6.9	45.1
MGA_1942	LOCUS_19380	sequence1:1989598..1990419(-)	partial			WP_013228973.1	cytochrome P450	100.0	66.7	43.6
MGA_1953	LOCUS_19490	sequence1:2000698..2001363(-)	partial			WP_011142861.1	TetR family transcriptional regulator	87.3	49.4	28.6
MGA_1958	LOCUS_19540	sequence1:2005701..2005862(-)	frameshift		2005585,2005679,2005652,2005703	WP_087902221.1	IS3-like element IS987 family transposase	100.0	12.6	79.2
MGA_1962	LOCUS_19580	sequence1:2012483..2014246(+)	partial			WP_014000452.1	PE family protein PE_PGRS12, long form	20.8	12.8	42.6
MGA_1966	LOCUS_19620	sequence1:2017549..2017788(-)	partial			WP_011729843.1	antitoxin MazE family protein	53.2	60.9	57.1
MGA_1987	LOCUS_19830	sequence1:2036542..2036925(+)	partial			WP_003901542.1	triacylglycerol lipase LipY	78.0	22.7	30.3
MGA_2012	LOCUS_20080	sequence1:2054069..2054725(+)	frameshift,internal_stop_codon	2054723..2054725(+)	2054704,2054944,2054740,2054710,2054743,2054713,2054764	WP_010886133.1	PE family protein	75.2	29.5	50.0
MGA_2014	LOCUS_20100	sequence1:2056815..2058632(+)	partial			WP_003911027.1	PE family protein	19.2	26.4	58.6
MGA_2026	LOCUS_20220	sequence1:2068648..2069580(-)	partial			WP_003892094.1	cytochrome P450	44.2	34.6	35.0
MGA_2042	LOCUS_20380	sequence1:2081289..2082371(+)	frameshift		2082030,2082233,2082218,2082236,2082221,2082222,2082063	WP_010950451.1	PE family protein	34.2	14.7	52.8
MGA_2047	LOCUS_20430	sequence1:2090004..2090381(+)	partial			WP_003413391.1	preprotein translocase subunit YajC	68.8	74.8	84.9
MGA_2048	LOCUS_20440	sequence1:2090476..2092284(+)	partial			WP_010907751.1	protein translocase subunit SecD	63.1	66.4	82.6
MGA_2074	LOCUS_20700	sequence1:2118178..2119290(-)	partial			WP_003911922.1	DUF2189 domain-containing protein	68.9	79.7	48.1
MGA_2090	LOCUS_20860	sequence1:2133097..2135454(-)	partial			WP_010886128.1	PE family protein	14.9	12.7	50.4
MGA_2109	LOCUS_21050	sequence1:2156705..2157019(+)	frameshift		2156664,2156549	WP_003898857.1	integration host factor, actinobacterial type	100.0	54.7	85.6
MGA_2130	LOCUS_21260	sequence1:2177184..2177720(+)	partial			WP_034859521.1	nuclear transport factor 2 family protein	73.6	68.9	32.3
MGA_2173	LOCUS_21690	sequence1:2221197..2221853(+)	internal_stop_codon	2221851..2221853(+)		WP_003902080.1	suf operon transcriptional regulator SufR	93.1	75.7	84.2
MGA_2174	LOCUS_21700	sequence1:2221865..2224450(+)	partial			WP_003894509.1	Fe-S cluster assembly protein SufB	39.8	71.9	95.6
MGA_2181	LOCUS_21770	sequence1:2229218..2229751(-)	partial			WP_005082270.1	DUF5666 domain-containing protein	84.7	63.3	45.8
MGA_2229	LOCUS_22250	sequence1:2294214..2295623(+)	partial			WP_099318959.1	PE family protein	27.3	27.9	57.8
MGA_2249	LOCUS_22450	sequence1:2314328..2314981(-)	partial			WP_011976241.1	class I SAM-dependent methyltransferase	57.1	55.4	36.7
MGA_2255	LOCUS_22510	sequence1:2324114..2324920(-)	partial			WP_003407798.1	NlpC/P60 family peptidoglycan-binding protein RipD	59.7	69.1	76.9
MGA_2258	LOCUS_22540	sequence1:2327102..2327566(+)	frameshift,internal_stop_codon	2327074..2327076(+)	2327060,2327094	WP_003403998.1	hypothetical protein	98.1	75.9	46.4
MGA_2271	LOCUS_22670	sequence1:2345533..2346294(+)	partial			WP_010908850.1	antibiotic transporter	75.1	65.6	30.6
MGA_2278	LOCUS_22740	sequence1:2352854..2353966(+)	partial			WP_012257167.1	glycosyltransferase family 1 protein	73.5	73.6	35.7
MGA_2286	LOCUS_22820	sequence1:2363350..2366733(+)	frameshift,internal_stop_codon	2366731..2366733(+)	2366820	WP_010950490.1	PE family protein	8.5	12.4	46.9
MGA_2296	LOCUS_22920	sequence1:2380632..2381729(+)	partial			WP_010948536.1	class I SAM-dependent methyltransferase	49.0	37.1	26.6
MGA_2299	LOCUS_22950	sequence1:2394386..2402929(+)	partial			WP_067456433.1	type I polyketide synthase	75.6	55.4	49.8
MGA_2300	LOCUS_22960	sequence1:2402929..2410563(+)	partial			WP_067456433.1	type I polyketide synthase	80.1	52.7	45.9
MGA_2305	LOCUS_23010	sequence1:2414585..2419183(+)	frameshift		2419171	WP_012296729.1	non-ribosomal peptide synthetase	99.8	43.7	58.0
MGA_2306	LOCUS_23020	sequence1:2419194..2431754(+)	frameshift		2419171,2419174	WP_005112588.1	non-ribosomal peptide synthetase	97.0	49.7	60.9
MGA_2309	LOCUS_23050	sequence1:2433520..2435352(+)	frameshift		2435328,2435331	WP_010886152.1	PE family protein	29.2	28.2	35.4
MGA_2316	LOCUS_23110	sequence1:2441082..2441768(-)	frameshift		2441824	WP_005084962.1	hypothetical protein	100.0	51.2	65.8
MGA_2317	LOCUS_23120	sequence1:2441654..2442400(-)	frameshift		2441815	WP_011731325.1	hypothetical protein	78.2	44.4	59.0
MGA_2320	LOCUS_23150	sequence1:2444689..2444868(-)	partial			WP_011731323.1	hypothetical protein	74.6	62.9	59.1
MGA_2343	LOCUS_23380	sequence1:2463989..2465446(-)	partial			WP_011729255.1	serine/threonine-protein kinase	65.6	65.3	61.1
MGA_2367	LOCUS_23600	sequence1:2490664..2491395(-)	partial			WP_011031334.1	RelA/SpoT domain-containing protein	73.3	55.0	38.5
MGA_2372	LOCUS_23650	sequence1:2493295..2494503(+)	partial			WP_003899674.1	tyrosine-type recombinase/integrase	14.2	80.3	75.4
MGA_2379	LOCUS_23720	sequence1:2502708..2503142(-)	partial			WP_014877829.1	hypothetical protein	78.5	61.1	42.4
MGA_2383	LOCUS_23760	sequence1:2505821..2506372(-)	partial			WP_037395526.1	DNA ligase D	97.8	21.2	53.3
MGA_2387	LOCUS_23800	sequence1:2510902..2512941(+)	partial			WP_011729255.1	serine/threonine-protein kinase	47.9	63.9	59.2
MGA_2397	LOCUS_23900	sequence1:2525910..2527622(-)	partial			WP_003898998.1	serine/threonine protein kinase PknE	60.4	62.5	56.5
MGA_2413	LOCUS_24060	sequence1:2544300..2545778(+)	partial			WP_010886125.1	PE domain-containing protein	78.9	30.8	32.9
MGA_2435	LOCUS_24280	sequence1:2581959..2584145(+)	partial			WP_003404782.1	serine/threonine protein kinase PknD	43.8	43.4	41.4
MGA_2459	LOCUS_24520	sequence1:2606308..2607741(+)	partial			WP_010886165.1	PE family protein	46.1	15.5	35.4
MGA_2460	LOCUS_24530	sequence1:2607776..2609200(+)	partial			WP_010950491.1	PE family protein	27.2	14.9	43.4
MGA_2469	LOCUS_24620	sequence1:2617229..2618155(-)	frameshift		2618153,2618183	WP_087902221.1	IS3-like element IS987 family transposase	90.9	67.1	50.9
MGA_2470	LOCUS_24630	sequence1:2618513..2618872(-)	partial			WP_013383033.1	PIN domain-containing protein	96.6	57.8	37.4
MGA_2471	LOCUS_24640	sequence1:2618885..2619421(-)	partial			WP_003411901.1	helix-turn-helix domain-containing protein	50.0	78.1	76.4
MGA_2473	LOCUS_24660	sequence1:2619965..2620153(+)	partial			WP_011015575.1	HigA family addiction module antitoxin	74.2	38.0	67.4
MGA_2487	LOCUS_24800	sequence1:2634018..2634407(-)	partial			WP_174519705.1	DUF1906 domain-containing protein	68.2	35.1	58.0
MGA_2490	LOCUS_24830	sequence1:2636485..2638194(+)	partial			WP_004193152.1	T2SS-translocated chitinase	54.5	68.4	39.4
MGA_2491	LOCUS_24840	sequence1:2638372..2640075(+)	partial			WP_011103519.1	sensor domain-containing diguanylate cyclase	56.1	76.9	30.6
MGA_2498	LOCUS_24910	sequence1:2645883..2648399(+)	partial			WP_013227688.1	SpoIIE family protein phosphatase	59.7	36.2	48.9
MGA_2501	LOCUS_24940	sequence1:2649610..2651124(+)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	54.4	28.8	47.5
MGA_2504	LOCUS_24970	sequence1:2652890..2674384(+)	partial			WP_005112588.1	non-ribosomal peptide synthetase	44.1	39.5	59.0
MGA_2507	LOCUS_25000	sequence1:2678548..2680017(+)	frameshift,internal_stop_codon	2680015..2680017(+)	2680050	WP_011729139.1	MFS transporter	99.4	77.7	73.5
MGA_2513	LOCUS_25060	sequence1:2685676..2686245(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	98.9	29.9	42.8
MGA_2515	LOCUS_25080	sequence1:2686767..2687246(+)	partial			WP_013225359.1	YbhB/YbcL family Raf kinase inhibitor-like protein	95.6	45.2	62.5
MGA_2521	LOCUS_25140	sequence1:2691324..2692592(+)	partial			WP_010950570.1	PE domain-containing protein	78.0	34.5	39.7
MGA_2532	LOCUS_25250	sequence1:2706463..2707953(+)	partial			WP_013531947.1	molybdopterin-binding protein	38.9	72.2	43.3
MGA_2552	LOCUS_25450	sequence1:2724599..2725153(-)	partial			WP_030868049.1	TetR/AcrR family transcriptional regulator	24.5	22.8	57.8
MGA_2563	LOCUS_25560	sequence1:2735115..2735627(+)	frameshift		2735142	WP_010969791.1	class II aldolase/adducin family protein	74.7	56.3	29.1
MGA_2565	LOCUS_25580	sequence1:2736978..2738261(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	95.6	71.4	47.9
MGA_2591	LOCUS_25840	sequence1:2769382..2769951(-)	partial			WP_003897321.1	hypothetical protein	83.1	74.8	36.7
MGA_2597	LOCUS_25900	sequence1:2773705..2774568(+)	partial			WP_003906993.1	PPE family protein	65.5	32.5	44.8
MGA_2616	LOCUS_26090	sequence1:2793602..2794963(-)	partial			WP_011726824.1	aromatic ring-hydroxylating dioxygenase subunit alpha	44.2	49.4	34.3
MGA_2634	LOCUS_26270	sequence1:2810950..2812695(-)	partial			WP_011015416.1	cytochrome b/b6 domain-containing protein	54.4	48.7	40.8
MGA_2673	LOCUS_26660	sequence1:2858080..2859141(-)	partial			WP_010886091.1	PE family protein	36.8	21.5	53.1
MGA_2702	LOCUS_26950	sequence1:2892166..2893011(+)	frameshift		2892834,2892843,2892846,2892849,2892855,2892795,2892831,2892539	WP_014000452.1	PE family protein PE_PGRS12, long form	47.0	13.0	45.5
MGA_2706	LOCUS_26990	sequence1:2896149..2897213(+)	partial			WP_003409337.1	adhesin Apa	51.4	57.8	76.1
MGA_2715	LOCUS_27080	sequence1:2906836..2907363(+)	partial			WP_003113399.1	dienelactone hydrolase family protein	96.6	40.9	65.7
MGA_2716	LOCUS_27090	sequence1:2907442..2910099(+)	partial			WP_010950392.1	LuxR family transcriptional regulator	88.2	74.9	33.7
MGA_2739	LOCUS_27320	sequence1:2931541..2931723(-)	partial			WP_003895017.1	(2Fe-2S)-binding protein	85.0	73.9	64.7
MGA_2745	LOCUS_27380	sequence1:2937612..2938220(+)	frameshift		2938175	WP_011726830.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	79.7	62.5	46.7
MGA_2746	LOCUS_27390	sequence1:2938222..2938446(+)	frameshift		2938175	WP_003407374.1	lysophospholipid acyltransferase family protein	100.0	28.7	37.5
MGA_2748	LOCUS_27410	sequence1:2938894..2940213(-)	partial			WP_013368570.1	adenylate synthase	62.4	63.7	31.1
MGA_2750	LOCUS_27430	sequence1:2941969..2942805(+)	partial			WP_003900384.1	PE family protein	76.3	73.9	31.8
MGA_2753	LOCUS_27460	sequence1:2943879..2944433(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	57.6	19.0	39.6
MGA_2757	LOCUS_27500	sequence1:2945882..2946004(+)	frameshift		2945796	WP_011729157.1	dienelactone hydrolase family protein	100.0	12.9	65.0
MGA_2773	LOCUS_27660	sequence1:2957891..2958847(-)	frameshift		2957929,2957917	WP_003905649.1	PE family protein	36.5	18.6	54.3
MGA_2784	LOCUS_27770	sequence1:2966613..2967119(-)	frameshift		2967302,2967295	WP_003905677.1	macro domain-containing protein	100.0	47.8	82.1
MGA_2794	LOCUS_27870	sequence1:2974951..2975442(-)	partial			WP_003900428.1	hypothetical protein	81.6	74.4	57.1
MGA_2827	LOCUS_28200	sequence1:3001196..3001729(+)	frameshift		3001711	WP_003409685.1	YqjF family protein	90.4	62.3	74.4
MGA_2848	LOCUS_28410	sequence1:3023641..3024828(-)	partial			WP_011726850.1	LuxR C-terminal-related transcriptional regulator	74.4	73.9	36.1
MGA_2860	LOCUS_28530	sequence1:3036525..3036950(+)	partial			WP_003899109.1	Mce associated membrane protein	100.0	73.8	72.3
MGA_2862	LOCUS_28550	sequence1:3037545..3037961(+)	partial			WP_003899111.1	DUF732 domain-containing protein	65.9	72.8	75.8
MGA_2869	LOCUS_28620	sequence1:3043049..3044701(-)	partial			WP_010886090.1	PE family protein	21.8	13.5	49.2
MGA_2878	LOCUS_28710	sequence1:3051066..3051704(+)	partial			WP_003910785.1	DUF222 domain-containing protein	75.5	71.6	64.4
MGA_2879	LOCUS_28720	sequence1:3051593..3052426(+)	frameshift		3051506	WP_003898743.1	HNH endonuclease signature motif containing protein	99.6	61.0	76.9
MGA_2891	LOCUS_28840	sequence1:3064207..3065148(+)	partial			WP_013224730.1	LLM class flavin-dependent oxidoreductase	66.5	72.5	37.3
MGA_2917	LOCUS_29100	sequence1:3085314..3086759(+)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	58.6	53.2	40.8
MGA_2918	LOCUS_29110	sequence1:3086847..3088421(+)	partial			WP_010950639.1	PecA family PE domain-processing aspartic protease	55.2	55.6	41.7
MGA_2922	LOCUS_29150	sequence1:3090887..3091894(-)	partial			WP_076053694.1	PAS domain S-box protein	45.1	18.7	32.3
MGA_2927	LOCUS_29200	sequence1:3098718..3106208(-)	partial			WP_011026868.1	type I polyketide synthase	38.1	45.3	44.5
MGA_2928	LOCUS_29210	sequence1:3106215..3112826(-)	partial			WP_193484145.1	type I polyketide synthase	44.3	47.4	48.4
MGA_2951	LOCUS_29440	sequence1:3136485..3137063(-)	partial			WP_011704690.1	carboxymuconolactone decarboxylase family protein	65.6	82.9	36.2
MGA_2952	LOCUS_29450	sequence1:3137451..3137750(+)	partial			WP_003408976.1	type VII secretion system ESX-5 target PE18	73.7	73.7	68.5
MGA_2959	LOCUS_29520	sequence1:3141872..3166504(-)	partial			WP_005112588.1	non-ribosomal peptide synthetase	64.4	64.5	59.9
MGA_2967	LOCUS_29600	sequence1:3171885..3185630(-)	frameshift		3171896	WP_163682492.1	non-ribosomal peptide synthetase	99.9	82.6	62.2
MGA_3002	LOCUS_29950	sequence1:3224386..3224736(+)	partial			WP_011029650.1	DoxX family protein	74.1	63.2	62.8
MGA_3028	LOCUS_30210	sequence1:3247511..3249040(+)	partial			WP_011338147.1	VWA domain-containing protein	57.2	47.4	30.9
MGA_3046	LOCUS_30390	sequence1:3276168..3276974(-)	frameshift		3276984	WP_003902238.1	apolipoprotein N-acyltransferase	99.6	31.5	81.5
MGA_3047	LOCUS_30400	sequence1:3276892..3278871(-)	frameshift		3276984	WP_003902238.1	apolipoprotein N-acyltransferase	88.8	67.2	65.4
MGA_3053	LOCUS_30460	sequence1:3283205..3284422(+)	partial			WP_013224715.1	hypothetical protein	73.1	78.5	31.9
MGA_3098	LOCUS_30910	sequence1:3330612..3330992(-)	partial			WP_220096343.1	DUF4190 domain-containing protein	69.0	33.7	35.2
MGA_3114	LOCUS_31070	sequence1:3346699..3347001(-)	frameshift,internal_stop_codon	3347028..3347030(-)	3347012	WP_003411107.1	hypothetical protein	81.0	60.6	79.5
MGA_3115	LOCUS_31080	sequence1:3347035..3347334(+)	partial			WP_003411110.1	hypothetical protein	60.6	16.8	78.3
MGA_3121	LOCUS_31140	sequence1:3351458..3351856(-)	partial			WP_002680575.1	DDE-type integrase/transposase/recombinase	53.8	17.8	35.2
MGA_3124	LOCUS_31170	sequence1:3353645..3354193(+)	partial			WP_002668780.1	DUF4143 domain-containing protein	93.4	40.2	40.9
MGA_3126	LOCUS_31190	sequence1:3354742..3355404(+)	partial			WP_003411129.1	phosphoribosyltransferase family protein	100.0	62.8	74.2
MGA_3152	LOCUS_31450	sequence1:3382379..3382753(-)	frameshift		3382782	WP_003900481.1	Rv2175c family DNA-binding protein	100.0	84.9	86.3
MGA_3174	LOCUS_31670	sequence1:3406044..3406226(-)	frameshift		3406221	WP_003417916.1	type II toxin-antitoxin system VapC family toxin	95.0	43.8	49.1
MGA_3175	LOCUS_31680	sequence1:3406325..3406591(-)	partial			WP_003417918.1	type II toxin-antitoxin system Phd/YefM family antitoxin	67.0	58.8	55.0
MGA_3219	LOCUS_32120	sequence1:3453461..3453892(+)	frameshift		3453444	WP_011727958.1	IS21-like element helper ATPase IstB	100.0	50.4	86.7
MGA_3220	LOCUS_32130	sequence1:3454007..3455275(-)	partial			WP_011029800.1	sensor histidine kinase	46.0	45.0	36.4
MGA_3221	LOCUS_32140	sequence1:3455285..3455668(-)	partial			WP_011706579.1	UvrY/SirA/GacA family response regulator transcription factor	92.9	55.1	34.7
MGA_3230	LOCUS_32230	sequence1:3461479..3461853(-)	partial			WP_041323318.1	WhiB family transcriptional regulator	74.2	79.3	73.9
MGA_3249	LOCUS_32420	sequence1:3479558..3480391(+)	frameshift		3480289	WP_003899118.1	PecA family PE domain-processing aspartic protease	84.5	41.2	44.4
MGA_3250	LOCUS_32430	sequence1:3480358..3481203(+)	frameshift		3480289	WP_010886098.1	PecA family PE domain-processing aspartic protease	94.0	21.7	39.2
MGA_3254	LOCUS_32470	sequence1:3483246..3483593(-)	partial			WP_003900428.1	hypothetical protein	97.4	64.1	30.4
MGA_3279	LOCUS_32720	sequence1:3508141..3508542(+)	partial			WP_223495338.1	hypothetical protein	38.3	74.3	50.0
MGA_3280	LOCUS_32730	sequence1:3508556..3509590(-)	partial			WP_003899240.1	Hsp70 family protein	99.1	60.1	58.4
MGA_3288	LOCUS_32810	sequence1:3515667..3517082(-)	partial			WP_010886110.1	serine/threonine protein kinase PknH	76.6	58.5	43.9
MGA_3293	LOCUS_32860	sequence1:3519292..3519690(+)	partial			WP_000764211.1	ester cyclase	84.1	57.5	31.5
MGA_3301	LOCUS_32940	sequence1:3524405..3525061(-)	partial			WP_011728744.1	TetR/AcrR family transcriptional regulator	55.5	54.3	36.3
MGA_3302	LOCUS_32950	sequence1:3525123..3526307(-)	frameshift		3526348	WP_013228942.1	OB-fold domain-containing protein	93.7	66.7	34.1
MGA_3309	LOCUS_33020	sequence1:3531236..3531898(-)	partial			WP_011728744.1	TetR/AcrR family transcriptional regulator	53.6	53.0	34.7
MGA_3343	LOCUS_33360	sequence1:3567294..3571334(+)	partial			WP_172626010.1	DEAD/DEAH box helicase family protein	57.3	79.2	40.2
MGA_3353	LOCUS_33460	sequence1:3589195..3589431(-)	partial			WP_003409780.1	type II toxin-antitoxin system antitoxin MazE5	100.0	62.4	78.2
MGA_3359	LOCUS_33520	sequence1:3592537..3592998(+)	partial			WP_003409784.1	SEC-C metal-binding domain-containing protein	89.5	69.9	60.6
MGA_3360	LOCUS_33530	sequence1:3592995..3594107(+)	partial			WP_011142953.1	plasmid pRiA4b ORF-3 family protein	40.8	77.0	43.7
MGA_3361	LOCUS_33540	sequence1:3594095..3594865(-)	partial			WP_011731117.1	serine/threonine-protein kinase	90.2	63.4	49.6
MGA_3372	LOCUS_33650	sequence1:3602529..3603056(+)	frameshift		3602512	WP_054880958.1	hypothetical protein	98.9	82.5	72.6
MGA_3373	LOCUS_33660	sequence1:3603109..3604161(+)	partial			WP_013227909.1	DUF5685 family protein	86.9	68.2	55.2
MGA_3377	LOCUS_33700	sequence1:3608186..3609040(-)	partial			WP_003899254.1	hypothetical protein	58.5	77.2	60.5
MGA_3384	LOCUS_33770	sequence1:3613306..3614295(-)	partial			WP_013225667.1	LLM class flavin-dependent oxidoreductase	73.6	63.1	33.5
MGA_3386	LOCUS_33790	sequence1:3615434..3616411(-)	partial			WP_005112994.1	LLM class F420-dependent oxidoreductase	44.0	50.5	37.7
MGA_3396	LOCUS_33890	sequence1:3627174..3627338(-)	partial			WP_003892129.1	hypothetical protein	94.4	27.9	49.0
MGA_3412	LOCUS_34050	sequence1:3640261..3640875(+)	partial			WP_011730617.1	hypothetical protein	71.1	80.2	35.3
MGA_3414	LOCUS_34070	sequence1:3641816..3644509(+)	partial			WP_003401912.1	LuxR family transcriptional regulator	63.5	53.0	39.1
MGA_3415	LOCUS_34080	sequence1:3644736..3646772(+)	partial			WP_013224710.1	class I SAM-dependent methyltransferase	16.8	46.2	46.1
MGA_3419	LOCUS_34120	sequence1:3650175..3652073(-)	partial			WP_011729255.1	serine/threonine-protein kinase	67.6	84.2	50.6
MGA_3420	LOCUS_34130	sequence1:3652134..3654029(-)	partial			WP_011729255.1	serine/threonine-protein kinase	45.3	57.8	61.9
MGA_3421	LOCUS_34140	sequence1:3654288..3654968(+)	partial			WP_011729147.1	hypothetical protein	18.1	21.7	57.8
MGA_3440	LOCUS_34330	sequence1:3672339..3673253(-)	partial			WP_003899282.1	TPM domain-containing protein	76.0	33.0	38.1
MGA_3442	LOCUS_34350	sequence1:3674575..3676059(+)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	58.7	55.2	44.5
MGA_3443	LOCUS_34360	sequence1:3676102..3678024(-)	partial			WP_010950451.1	PE family protein	20.2	15.9	50.0
MGA_3451	LOCUS_34440	sequence1:3688889..3689191(+)	partial			WP_234707837.1	hypothetical protein	61.0	84.7	77.0
MGA_3453	LOCUS_34460	sequence1:3690386..3691237(+)	partial			WP_003405603.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	60.1	67.7	77.6
MGA_3476	LOCUS_34690	sequence1:3712923..3715133(+)	partial			WP_005091701.1	ATP-binding cassette domain-containing protein	72.3	63.2	42.1
MGA_3477	LOCUS_34700	sequence1:3715117..3715659(-)	partial			WP_037388632.1	isoprenylcysteine carboxylmethyltransferase family protein	61.7	70.0	34.5
MGA_3481	LOCUS_34740	sequence1:3722765..3723085(+)	partial			WP_000211949.1	NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	58.5	12.9	35.1
MGA_3488	LOCUS_34810	sequence1:3728023..3728529(-)	partial			WP_003899112.1	CAP domain-containing protein	85.1	64.7	65.7
MGA_3504	LOCUS_34970	sequence1:3744846..3745139(-)	partial			WP_003401623.1	muconolactone Delta-isomerase family protein	96.9	46.1	72.3
MGA_3507	LOCUS_35000	sequence1:3747930..3750425(-)	partial			WP_014000452.1	PE family protein PE_PGRS12, long form	15.0	13.1	50.8
MGA_3508	LOCUS_35010	sequence1:3750848..3753256(-)	partial			WP_010950451.1	PE family protein	15.7	15.0	48.4
MGA_3518	LOCUS_35110	sequence1:3763593..3764048(-)	partial			WP_010950832.1	PPE family protein	99.3	37.3	34.7
MGA_3546	LOCUS_35390	sequence1:3787232..3787693(-)	partial			WP_003412264.1	Low molecular weight antigen MTB12	76.5	69.0	42.7
MGA_3584	LOCUS_35770	sequence1:3840418..3841926(+)	partial			WP_003410786.1	PE family protein	48.2	48.7	40.5
MGA_3631	LOCUS_36240	sequence1:3904226..3904657(-)	frameshift		3904677	WP_011727958.1	IS21-like element helper ATPase IstB	100.0	50.4	86.7
MGA_3658	LOCUS_36510	sequence1:3938118..3938885(-)	partial			WP_011728045.1	type VII secretion target	99.2	65.7	53.3
MGA_3678	LOCUS_36710	sequence1:3964058..3966592(+)	partial			WP_010886090.1	PE family protein	14.3	13.6	50.4
MGA_3682	LOCUS_36750	sequence1:3969809..3970768(+)	frameshift		3969542	WP_011727957.1	DDE-type integrase/transposase/recombinase	100.0	70.4	79.6
MGA_3683	LOCUS_36760	sequence1:3970765..3971325(+)	frameshift		3971163	WP_011727958.1	IS21-like element helper ATPase IstB	65.1	42.6	84.3
MGA_3684	LOCUS_36770	sequence1:3971292..3971615(+)	frameshift		3971163	WP_011727958.1	IS21-like element helper ATPase IstB	100.0	37.7	85.0
MGA_3685	LOCUS_36780	sequence1:3971905..3973674(-)	partial			WP_002121348.1	30S ribosomal protein S1	14.3	15.1	45.2
MGA_3686	LOCUS_36790	sequence1:3973671..3977063(-)	partial			WP_164930803.1	IGHMBP2 family helicase	25.5	56.3	31.3
MGA_3688	LOCUS_36810	sequence1:3977841..3979226(-)	partial			WP_012805190.1	hypothetical protein	5.2	4.2	70.8
MGA_3696	LOCUS_36890	sequence1:3989062..3990141(+)	partial			WP_003414388.1	EAL domain-containing protein	47.6	24.2	37.3
MGA_3715	LOCUS_37080	sequence1:4007487..4007900(+)	partial			WP_003412795.1	MmpS family transport accessory protein	98.5	50.2	73.4
MGA_3724	LOCUS_37170	sequence1:4017812..4018054(-)	partial			WP_003412942.1	DUF3618 domain-containing protein	63.8	68.0	76.5
MGA_3726	LOCUS_37190	sequence1:4018861..4019361(+)	partial			WP_010886091.1	PE family protein	61.4	16.8	52.9
MGA_3727	LOCUS_37200	sequence1:4019470..4019949(+)	partial			WP_003401619.1	DUF3060 domain-containing protein	46.5	33.6	45.9
MGA_3736	LOCUS_37290	sequence1:4037786..4038940(+)	partial			WP_000036619.1	Rieske 2Fe-2S domain-containing protein	60.7	57.8	28.5
MGA_3749	LOCUS_37420	sequence1:4051563..4052339(+)	partial			WP_011228169.1	SDR family oxidoreductase	68.6	74.3	37.4
MGA_3764	LOCUS_37570	sequence1:4070888..4071394(+)	partial			WP_003407152.1	membrane protein	86.9	66.4	62.3
MGA_3782	LOCUS_37750	sequence1:4087176..4088864(+)	partial			WP_037391049.1	nitric oxide reductase activation protein NorD	72.6	64.7	28.8
MGA_3786	LOCUS_37790	sequence1:4091316..4092425(-)	partial			WP_003899402.1	alpha/beta hydrolase	76.7	69.2	30.8
MGA_3804	LOCUS_37970	sequence1:4110720..4111736(-)	partial			WP_003404782.1	serine/threonine protein kinase PknD	87.9	41.9	41.9
MGA_3805	LOCUS_37980	sequence1:4111839..4112846(-)	partial			WP_013095373.1	2-keto-3-deoxygluconate aldolase	30.4	33.1	34.0
MGA_3883	LOCUS_38760	sequence1:4200372..4203197(+)	partial			WP_010886067.1	PE family protein	13.2	25.5	55.6
MGA_3885	LOCUS_38780	sequence1:4204406..4204900(-)	partial			WP_010886147.1	PE family protein	61.6	6.1	48.5
MGA_3886	LOCUS_38790	sequence1:4205029..4205517(-)	partial			WP_010886147.1	PE family protein	63.0	6.1	50.0
MGA_3889	LOCUS_38820	sequence1:4207312..4208301(+)	partial			WP_011387819.1	NAD-dependent epimerase/dehydratase family protein	70.8	69.4	33.1
MGA_3921	LOCUS_39140	sequence1:4241340..4243082(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	69.5	66.3	73.2
MGA_3927	LOCUS_39200	sequence1:4248790..4252659(+)	partial			WP_011030279.1	cyclic Di-GMP phosphodiesterase RmdB	33.8	57.0	38.2
MGA_3933	LOCUS_39260	sequence1:4258785..4263662(-)	partial			WP_010950639.1	PecA family PE domain-processing aspartic protease	9.3	26.9	43.7
MGA_3936	LOCUS_39290	sequence1:4265819..4267018(+)	partial			WP_003900088.1	PPE family protein	43.4	29.7	46.8
MGA_3941	LOCUS_39340	sequence1:4270801..4271259(+)	partial			WP_010908129.1	LppP/LprE family lipoprotein	84.2	63.4	85.2
MGA_3943	LOCUS_39360	sequence1:4272803..4273123(-)	partial			WP_003400998.1	PE-PPE domain-containing protein	91.5	16.5	48.5
MGA_3945	LOCUS_39380	sequence1:4279026..4281695(-)	partial			WP_003404353.1	PE family protein	9.9	60.6	42.0
MGA_3949	LOCUS_39420	sequence1:4284520..4290243(-)	partial			WP_003407378.1	esterase PE16	3.5	12.9	48.5
MGA_3972	LOCUS_39650	sequence1:4312965..4313411(+)	partial			WP_010950507.1	DUF4190 domain-containing protein	52.0	37.9	42.9
MGA_3975	LOCUS_39680	sequence1:4315493..4316593(+)	frameshift		4316590	WP_010950506.1	lytic transglycosylase domain-containing protein	92.3	81.0	67.4
MGA_3980	LOCUS_39730	sequence1:4319744..4320880(+)	partial			WP_010950597.1	PE family protein	31.7	18.8	53.3
MGA_3982	LOCUS_39750	sequence1:4323272..4325128(-)	partial			WP_000526219.1	glycosyltransferase family 2 protein	49.2	84.0	35.4
MGA_3983	LOCUS_39760	sequence1:4325668..4327836(+)	partial			WP_000767363.1	hypothetical protein	35.3	67.7	33.8
MGA_3984	LOCUS_39770	sequence1:4327818..4328987(-)	partial			WP_014876760.1	TylF/MycF/NovP-related O-methyltransferase	54.2	80.1	54.5
MGA_3985	LOCUS_39780	sequence1:4329060..4329836(-)	partial			WP_010877819.1	class I SAM-dependent methyltransferase	47.3	44.3	44.4
MGA_3986	LOCUS_39790	sequence1:4329899..4334176(-)	partial			WP_011793191.1	class I SAM-dependent methyltransferase	15.2	66.2	40.3
MGA_3987	LOCUS_39800	sequence1:4334433..4335182(-)	partial			WP_011390104.1	TylF/MycF/NovP-related O-methyltransferase	85.1	36.8	51.2
MGA_3991	LOCUS_39840	sequence1:4338221..4338988(+)	partial			WP_013222956.1	class I SAM-dependent methyltransferase	81.2	70.7	43.5
MGA_3993	LOCUS_39860	sequence1:4341307..4343541(-)	partial			WP_000767363.1	hypothetical protein	34.3	67.7	33.5
MGA_4002	LOCUS_39950	sequence1:4354708..4355076(-)	partial			WP_003406258.1	anti-sigma E factor RseA	84.4	65.6	87.4
MGA_4018	LOCUS_40110	sequence1:4368309..4369925(-)	partial			WP_000526219.1	glycosyltransferase family 2 protein	30.5	47.5	31.6
MGA_4019	LOCUS_40120	sequence1:4370245..4372674(-)	partial			WP_000526219.1	glycosyltransferase family 2 protein	17.4	40.6	33.9
MGA_4022	LOCUS_40150	sequence1:4375155..4376999(-)	partial			WP_000526219.1	glycosyltransferase family 2 protein	22.6	40.4	26.8
MGA_4024	LOCUS_40170	sequence1:4379766..4382405(-)	partial			WP_010886171.1	PE family protein	11.8	7.5	45.2
MGA_4038	LOCUS_40310	sequence1:4395486..4395884(-)	partial			WP_010908041.1	hypothetical protein	47.7	79.7	73.0
MGA_4042	LOCUS_40350	sequence1:4398677..4401073(+)	frameshift		4399842,4400867,4399911,4400872,4399913,4400875,4400973,4400974,4400975,4400884,4400886,4401019,4400989	WP_010886091.1	PE family protein	15.4	19.5	39.8
MGA_4044	LOCUS_40370	sequence1:4401901..4405815(+)	partial			WP_048066275.1	PKD domain-containing protein	24.7	17.3	43.1
MGA_4048	LOCUS_40410	sequence1:4409765..4412047(+)	frameshift,internal_stop_codon	4409776..4409778(+),4409662..4409664(+)	4411655,4410635,4411666,4411669,4411670,4411671,4411639,4411679,4411618,4411682,4410981,4411118,4410737,4411634,4410935,4411642,4410815	WP_010950464.1	PE family protein	15.4	19.2	36.8
MGA_4055	LOCUS_40480	sequence1:4420623..4421162(+)	frameshift		4421153,4421172	WP_011730957.1	bifunctional MaoC family dehydratase N-terminal/OB-fold nucleic acid binding domain-containing protein	98.9	52.3	35.6
MGA_4056	LOCUS_40490	sequence1:4421162..4421563(+)	frameshift,internal_stop_codon	4421160..4421162(+)	4421180	WP_013224382.1	OB-fold domain-containing protein	91.0	39.7	50.4
MGA_4062	LOCUS_40550	sequence1:4426149..4426898(-)	partial			WP_013227105.1	MBL fold metallo-hydrolase	49.0	60.5	38.4
MGA_4079	LOCUS_40720	sequence1:4444470..4444712(+)	partial			WP_003406169.1	hemophore-related protein	100.0	72.7	71.2
MGA_4106	LOCUS_40990	sequence1:4476308..4476922(-)	partial			WP_011727450.1	hypothetical protein	73.5	66.2	64.9
MGA_4117	LOCUS_41100	sequence1:4487692..4488396(+)	frameshift,internal_stop_codon	4488406..4488408(+),4488394..4488396(+)	4488432	WP_003406075.1	hypothetical protein	84.2	83.3	44.6
MGA_4126	LOCUS_41190	sequence1:4493618..4494097(+)	frameshift		4493998	WP_003898744.1	class I SAM-dependent methyltransferase	84.3	46.5	69.6
MGA_4127	LOCUS_41200	sequence1:4494010..4494441(+)	frameshift,internal_stop_codon	4494440..4494442(+)	4493998	WP_003898744.1	class I SAM-dependent methyltransferase	99.3	50.0	66.9
MGA_4150	LOCUS_41430	sequence1:4515604..4516578(-)	partial			WP_012257951.1	SDR family NAD(P)-dependent oxidoreductase	79.0	30.1	34.0
MGA_4154	LOCUS_41470	sequence1:4519824..4521485(-)	partial			WP_110170977.1	VWA domain-containing protein	52.8	44.1	33.4
MGA_4160	LOCUS_41530	sequence1:4526109..4527401(+)	partial			WP_005064806.1	TetR/AcrR family transcriptional regulator	39.3	76.1	37.1
MGA_4172	LOCUS_41650	sequence1:4542912..4544792(-)	partial			WP_003405919.1	PPE family protein	55.9	59.9	37.6
MGA_4174	LOCUS_41670	sequence1:4548270..4549466(+)	frameshift		4549448,4549445	WP_010950464.1	PE family protein	30.7	20.1	59.8
MGA_4175	LOCUS_41680	sequence1:4549466..4551022(+)	frameshift,internal_stop_codon	4549426..4549428(+),4551022..4551024(+),4551021..4551023(+)	4550690,4549443,4549445,4550025,4549355,4550444,4550508,4550614,4549919	WP_014000452.1	PE family protein PE_PGRS12, long form	12.5	7.1	55.4
MGA_4181	LOCUS_41740	sequence1:4556037..4556612(+)	partial			WP_010908039.1	TetR/AcrR family transcriptional regulator	32.5	45.3	74.2
MGA_4184	LOCUS_41770	sequence1:4557678..4558667(-)	partial			WP_013226303.1	alpha/beta hydrolase	72.6	72.7	32.7
MGA_4185	LOCUS_41780	sequence1:4558797..4559906(+)	partial			WP_013225697.1	amidohydrolase family protein	71.3	69.9	67.7
MGA_4194	LOCUS_41870	sequence1:4566114..4566680(-)	partial			WP_010950494.1	hypothetical protein	67.6	54.7	77.2
MGA_4196	LOCUS_41890	sequence1:4567340..4567714(-)	partial			WP_005112946.1	hypothetical protein	36.3	46.9	52.1
MGA_4206	LOCUS_41990	sequence1:4574712..4575908(+)	partial			WP_003906341.1	HNH endonuclease signature motif containing protein	92.2	73.2	59.6
MGA_4219	LOCUS_42120	sequence1:4585974..4586336(+)	partial			WP_003898492.1	HNH endonuclease signature motif containing protein	85.8	20.1	61.2
MGA_4223	LOCUS_42160	sequence1:4589660..4589905(+)	partial			WP_003405844.1	exodeoxyribonuclease VII small subunit	60.5	57.6	81.6
MGA_4230	LOCUS_42230	sequence1:4596743..4597738(+)	partial			WP_010950492.1	hypothetical protein	73.7	80.5	64.9
MGA_4247	LOCUS_42400	sequence1:4614373..4615017(-)	partial			WP_010908871.1	RDD family protein	77.6	66.7	68.1
MGA_4265	LOCUS_42580	sequence1:4631111..4633633(+)	frameshift,internal_stop_codon	4632540..4632542(+)	4632389,4633478,4633483,4633484,4633453,4633133,4633463,4632635,4632860,4633469,4633471	WP_010950490.1	PE family protein	14.5	15.8	53.3
MGA_4266	LOCUS_42590	sequence1:4633860..4635851(+)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	41.2	29.9	58.6
MGA_4289	LOCUS_42820	sequence1:4665617..4665940(-)	partial			WP_005110193.1	hypothetical protein	74.8	77.9	53.1
MGA_4342	LOCUS_43350	sequence1:4722552..4723190(-)	partial			WP_003417421.1	PDZ-interacting protease regulator Ppr1	55.2	42.3	41.2
MGA_4350	LOCUS_43430	sequence1:4732269..4732589(-)	partial			WP_017265847.1	type II toxin-antitoxin system RelE/ParE family toxin	67.0	84.5	66.2
MGA_4358	LOCUS_43510	sequence1:4738394..4738711(+)	partial			WP_209912946.1	IS481 family transposase	63.8	16.3	70.1
MGA_4360	LOCUS_43530	sequence1:4740614..4741045(+)	frameshift		4740384,4740594	WP_011727958.1	IS21-like element helper ATPase IstB	100.0	50.4	87.4
MGA_4362	LOCUS_43550	sequence1:4741549..4742496(+)	frameshift		4741469	WP_068319765.1	ISL3 family transposase	93.3	69.2	35.4
MGA_4368	LOCUS_43610	sequence1:4747541..4747888(+)	partial			WP_003405142.1	zinc ribbon domain-containing protein	50.4	52.7	82.8
MGA_4393	LOCUS_43860	sequence1:4774195..4775607(+)	partial			WP_010950597.1	PE family protein	32.3	23.9	54.6
MGA_4399	LOCUS_43920	sequence1:4782254..4782508(+)	partial			WP_010907562.1	chorismate mutase	78.6	62.9	92.4
MGA_4401	LOCUS_43940	sequence1:4784233..4784853(-)	partial			WP_003133652.1	TetR/AcrR family transcriptional regulator	51.5	58.9	31.9
MGA_4405	LOCUS_43980	sequence1:4787979..4788947(-)	partial			WP_010886090.1	PE family protein	39.8	14.4	54.7
MGA_4407	LOCUS_44000	sequence1:4790009..4790914(+)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	69.4
MGA_4420	LOCUS_44130	sequence1:4808503..4809543(-)	partial			WP_000841995.1	integron integrase IntIA	19.7	21.2	39.7
MGA_4438	LOCUS_44310	sequence1:4830112..4830828(+)	partial			WP_011141333.1	hypothetical protein	45.4	57.4	33.3
MGA_4445	LOCUS_44380	sequence1:4834319..4836862(+)	frameshift,internal_stop_codon	4835358..4835360(+)	4836451,4836454,4836746,4836718,4836433,4836434,4836437,4835510,4836439,4836442	WP_010886105.1	PE family protein	17.5	21.7	45.3
MGA_4448	LOCUS_44410	sequence1:4839685..4840167(-)	partial			WP_003402111.1	NUDIX domain-containing protein	94.4	71.0	66.9
MGA_4460	LOCUS_44530	sequence1:4852463..4853554(+)	frameshift		4852461	WP_011205758.1	phosphatidylserine decarboxylase family protein	91.2	76.2	51.3
MGA_4473	LOCUS_44660	sequence1:4867179..4879211(+)	partial			WP_013224347.1	helix-turn-helix transcriptional regulator	20.1	80.8	26.6
MGA_4495	LOCUS_44880	sequence1:4897847..4898677(+)	frameshift,internal_stop_codon	4897986..4897988(+)	4897858,4898198	WP_003900223.1	resuscitation-promoting factor protein RpfA	69.9	40.8	61.1
MGA_4531	LOCUS_45240	sequence1:4928470..4928916(+)	frameshift		4928304,4928427	WP_011730075.1	membrane protein	99.3	48.5	40.8
MGA_4548	LOCUS_45410	sequence1:4944619..4945491(+)	partial			WP_003407157.1	membrane protein	65.5	73.9	68.2
MGA_4549	LOCUS_45420	sequence1:4945488..4946060(+)	partial			WP_003407152.1	membrane protein	80.5	69.5	69.9
MGA_4562	LOCUS_45550	sequence1:4958147..4958950(+)	partial			WP_003407157.1	membrane protein	60.7	61.3	52.5
MGA_4563	LOCUS_45560	sequence1:4958947..4959540(+)	partial			WP_003407152.1	membrane protein	70.1	62.7	61.6
MGA_4565	LOCUS_45580	sequence1:4959968..4960213(-)	partial			WP_011730082.1	hypothetical protein	96.3	45.6	39.7
MGA_4585	LOCUS_45780	sequence1:4979059..4980591(+)	partial			WP_011338147.1	VWA domain-containing protein	57.1	47.4	31.0
MGA_4607	LOCUS_46000	sequence1:5001153..5001449(+)	partial			WP_011730105.1	ferredoxin	61.2	78.9	76.7
MGA_4683	LOCUS_46760	sequence1:5073561..5074466(+)	frameshift		5074421	WP_010908844.1	adenylate/guanylate cyclase domain-containing protein	95.0	39.2	61.0
MGA_4684	LOCUS_46770	sequence1:5074460..5076610(+)	frameshift		5074418	WP_011726759.1	adenylate/guanylate cyclase domain-containing protein	99.3	71.6	45.4
MGA_4686	LOCUS_46790	sequence1:5079773..5080801(-)	partial			WP_010950651.1	type I polyketide synthase	86.8	7.1	55.6
MGA_4690	LOCUS_46830	sequence1:5085982..5086563(-)	partial			WP_012256887.1	TetR/AcrR family transcriptional regulator	75.1	66.8	30.2
MGA_4725	LOCUS_47180	sequence1:5120558..5120935(+)	partial			WP_010908759.1	DUF4395 domain-containing protein	93.6	72.7	69.2
MGA_4741	LOCUS_47340	sequence1:5136760..5137824(+)	partial			WP_003911027.1	PE family protein	34.5	26.4	59.0
MGA_4749	LOCUS_47420	sequence1:5145766..5146467(+)	frameshift		5146446	WP_011728203.1	TetR/AcrR family transcriptional regulator	88.8	47.5	64.3
MGA_4750	LOCUS_47430	sequence1:5146464..5147120(+)	frameshift,internal_stop_codon	5146465..5146467(+)	5146488	WP_011729485.1	TetR/AcrR family transcriptional regulator	88.1	43.1	55.2
MGA_4755	LOCUS_47480	sequence1:5150640..5151095(+)	partial			WP_013385395.1	cupin domain-containing protein	85.4	74.0	40.3
MGA_4758	LOCUS_47510	sequence1:5152836..5153306(+)	partial			WP_003403998.1	hypothetical protein	94.9	72.4	52.0
MGA_4795	LOCUS_47880	sequence1:5188997..5189302(-)	partial			WP_014878479.1	HNH endonuclease	97.0	73.1	56.1
MGA_4796	LOCUS_47890	sequence1:5189684..5191045(-)	frameshift,internal_stop_codon	5189684..5189686(-)	5189659	WP_010886128.1	PE family protein	28.5	13.1	54.3
MGA_4801	LOCUS_47940	sequence1:5196537..5198276(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	53.9	53.6	59.7
MGA_4814	LOCUS_48070	sequence1:5208676..5209011(-)	partial			WP_014876727.1	ferredoxin--NADP reductase	86.5	27.0	60.4
MGA_4907	LOCUS_49000	sequence1:5297248..5298441(+)	frameshift,internal_stop_codon	5298443..5298445(+),5298494..5298496(+)	5298432,5298433,5298435,5298436,5298692,5298697,5298442,5298698,5298448,5298705,5298704,5298708,5298709,5298453,5298711,5298712,5298459,5298715,5298508,5297745,5298529,5297763,5297764,5298532,5297766,5298534,5297769,5298542,5297263,5298544,5298545,5298546,5298547,5297266,5298549,5298550,5298552,5298554,5298555,5298556,5298557,5297790,5297793,5297794,5298562,5297796,5298572,5297808,5298322,5298580,5298581,5298584,5297818,5298586,5297820,5297821,5297823,5298598,5298600,5297833,5297832,5297835,5297836,5298603,5297850,5298430,5297857,5297859,5297860,5298627,5297862,5298635,5298637,5298639,5298640,5298641,5298642,5298643,5298645,5298646,5298647,5298648,5298651,5298396,5298656,5297890,5297895,5298424,5298425,5298428,5297662	WP_010886165.1	PE family protein	32.5	8.4	50.4
MGA_4924	LOCUS_49170	sequence1:5322896..5323423(+)	frameshift		5323405	WP_010908844.1	adenylate/guanylate cyclase domain-containing protein	96.6	23.1	82.8
MGA_4925	LOCUS_49180	sequence1:5323413..5324144(+)	frameshift		5323405,5324111	WP_010908844.1	adenylate/guanylate cyclase domain-containing protein	95.9	33.7	61.5
MGA_4926	LOCUS_49190	sequence1:5324198..5326000(+)	frameshift		5324114	WP_011726759.1	adenylate/guanylate cyclase domain-containing protein	99.5	56.7	47.5
MGA_4947	LOCUS_49400	sequence1:5345995..5348775(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	16.1	26.4	36.8
MGA_4953	LOCUS_49460	sequence1:5352958..5353176(-)	partial			WP_005065012.1	CbtB-domain containing protein	61.1	64.7	77.3
MGA_4991	LOCUS_49830	sequence1:5393937..5394689(+)	frameshift		5394659,5394668,5394662,5394683	WP_010950451.1	PE family protein	52.0	16.1	61.2
MGA_4992	LOCUS_49840	sequence1:5394881..5396467(+)	frameshift		5394659,5394668,5394671	WP_010886133.1	PE family protein	8.1	8.6	62.8
MGA_4994	LOCUS_49860	sequence1:5397998..5398282(-)	partial			WP_003899621.1	pilus assembly protein TadG-related protein	72.3	63.6	45.6
MGA_4995	LOCUS_49870	sequence1:5398323..5398589(-)	frameshift		5398331	WP_010886180.1	apoptosis inhibitor	98.9	69.6	66.7
MGA_5040	LOCUS_50320	sequence1:5437329..5439572(+)	partial			WP_013227688.1	SpoIIE family protein phosphatase	91.7	50.6	39.7
MGA_5042	LOCUS_50340	sequence1:5440639..5440848(-)	partial			WP_011727890.1	CDGSH iron-sulfur domain-containing protein	75.4	73.2	67.3
MGA_5047	LOCUS_50390	sequence1:5443833..5445029(+)	partial			WP_003899640.1	hypothetical protein	81.4	74.7	60.2
MGA_5055	LOCUS_50470	sequence1:5453041..5453412(+)	partial			WP_091593875.1	FAD-dependent monooxygenase	59.3	18.0	43.8
MGA_5064	LOCUS_50560	sequence1:5465197..5465907(+)	partial			WP_050039320.1	PadR family transcriptional regulator	61.4	77.1	75.9
MGA_5068	LOCUS_50600	sequence1:5470160..5472643(+)	internal_stop_codon	5472641..5472643(+),5470151..5470153(+)		WP_010950491.1	PE family protein	10.8	10.1	59.6
MGA_5075	LOCUS_50670	sequence1:5479335..5479793(-)	partial			WP_003419814.1	hypothetical protein	40.8	50.4	52.3
MGA_5081	LOCUS_50730	sequence1:5481659..5482888(-)	partial			WP_010886084.1	PE family protein	32.8	17.5	45.3
MGA_5087	LOCUS_50790	sequence1:5488979..5490328(-)	partial			WP_012639983.1	type II toxin-antitoxin system HipA family toxin	74.6	77.8	36.8
MGA_5095	LOCUS_50870	sequence1:5495309..5495716(-)	partial			WP_003420408.1	YbaB/EbfC family nucleoid-associated protein	74.1	75.2	76.0
MGA_5138	LOCUS_51300	sequence1:5536330..5537142(-)	partial			WP_003401619.1	DUF3060 domain-containing protein	34.4	41.8	40.4
MGA_5171	LOCUS_51630	sequence1:5569013..5570251(-)	partial			WP_005809350.1	alkyl/aryl-sulfatase	70.9	67.1	30.2
MGA_5178	LOCUS_51700	sequence1:5574922..5575938(+)	partial			WP_010865093.1	Gfo/Idh/MocA family oxidoreductase	41.4	43.3	32.2
MGA_5180	LOCUS_51720	sequence1:5577067..5577243(+)	frameshift		5577201,5577189	WP_011727957.1	DDE-type integrase/transposase/recombinase	89.7	11.3	80.8
MGA_5184	LOCUS_51760	sequence1:5580160..5581059(-)	partial			WP_010943186.1	DNA-processing protein DprA	74.9	62.4	36.7
MGA_5225	LOCUS_52170	sequence1:5614037..5615719(+)	partial			WP_003400012.1	type VII secretion system ESX-2 serine protease mycosin MycP2	57.9	58.9	85.8
MGA_5231	LOCUS_52230	sequence1:5621468..5621761(+)	frameshift,internal_stop_codon	5621451..5621453(+)	5621447	WP_003899734.1	transcriptional regulator WhiB6	93.8	75.0	79.1
MGA_5241	LOCUS_52330	sequence1:5634517..5636466(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	19.3	21.5	44.0
MGA_5248	LOCUS_52400	sequence1:5641533..5642180(-)	partial			WP_005084137.1	YcnI family protein	75.8	73.4	57.1
MGA_5254	LOCUS_52460	sequence1:5646784..5647446(+)	frameshift		5646554	WP_003899726.1	DUF4328 domain-containing protein	92.3	59.4	59.1
MGA_5256	LOCUS_52480	sequence1:5648288..5649259(-)	partial			WP_235624060.1	LCP family protein	92.0	69.4	67.0
MGA_5260	LOCUS_52520	sequence1:5652298..5652636(-)	internal_stop_codon	5652298..5652300(-)		WP_003899719.1	metallopeptidase family protein	99.1	81.0	81.1
MGA_5302	LOCUS_52940	sequence1:5712798..5713658(-)	partial			WP_013531211.1	AraC family transcriptional regulator	67.8	69.9	32.3
MGA_5317	LOCUS_53090	sequence1:5734163..5734444(-)	partial			WP_003420624.1	GreA/GreB family elongation factor	98.9	57.1	75.0
MGA_5327	LOCUS_53190	sequence1:5743499..5743645(-)	frameshift		5743649	WP_011730739.1	hypothetical protein	87.5	67.7	83.3
MGA_5335	LOCUS_53270	sequence1:5748840..5749622(+)	partial			WP_011728601.1	LLM class F420-dependent oxidoreductase	77.7	72.6	36.4
MGA_5370	LOCUS_53620	sequence1:5787817..5787960(+)	partial			WP_003855320.1	50S ribosomal protein L34	53.2	53.2	100.0
MGA_5390	LOCUS_53820	sequence1:5805792..5807297(-)	partial			WP_010950653.1	alpha/beta hydrolase	43.1	32.5	45.8
MGA_5395	LOCUS_53870	sequence1:5812270..5812809(+)	partial			WP_010950962.1	hypothetical protein	59.2	71.1	51.9
MGA_5397	LOCUS_53890	sequence1:5814266..5814979(+)	partial			WP_003900778.1	DUF5632 domain-containing protein	99.6	57.8	67.5
MGA_5410	LOCUS_54020	sequence1:5831194..5831685(-)	partial			WP_003400476.1	MarR family transcriptional regulator	94.5	73.1	86.4
MGA_5428	LOCUS_54200	sequence1:5849308..5850546(+)	partial			WP_014878795.1	replicative DNA helicase	97.3	39.0	56.4
MGA_5430	LOCUS_54220	sequence1:5852045..5852524(+)	partial			WP_003899074.1	DUF4262 domain-containing protein	99.4	73.0	49.4
MGA_5433	LOCUS_54250	sequence1:5856848..5857663(+)	partial			WP_004192152.1	SDR family oxidoreductase	71.6	75.3	34.5
MGA_5453	LOCUS_54450	sequence1:5875590..5876108(-)	partial			WP_003414734.1	nuclear transport factor 2 family protein	71.5	83.7	35.5
MGA_5460	LOCUS_54520	sequence1:5881545..5883056(+)	partial			WP_208267418.1	adenylate/guanylate cyclase domain-containing protein	80.1	70.9	33.0
MGA_5495	LOCUS_54860	sequence1:5917351..5918685(-)	partial			WP_010920958.1	aromatic ring-hydroxylating dioxygenase subunit alpha	45.5	50.5	34.8
MGA_5498	LOCUS_54890	sequence1:5921794..5922414(-)	partial			WP_013223605.1	TetR/AcrR family transcriptional regulator	46.1	47.7	38.9
MGA_5499	LOCUS_54900	sequence1:5922480..5923586(+)	partial			WP_010919114.1	hypothetical protein	54.1	57.1	32.7
MGA_5500	LOCUS_54910	sequence1:5923583..5924668(+)	partial			WP_011027920.1	phosphotransferase family protein	67.3	73.0	34.5
MGA_5506	LOCUS_54970	sequence1:5928828..5931764(-)	partial			WP_209645732.1	BTAD domain-containing putative transcriptional regulator	40.2	56.6	32.2
MGA_5514	LOCUS_55050	sequence1:5940392..5941045(+)	partial			WP_005087452.1	PadR family transcriptional regulator	65.9	65.1	34.4
MGA_5537	LOCUS_55280	sequence1:5962356..5962832(+)	partial			WP_003977090.1	MarR family winged helix-turn-helix transcriptional regulator	70.3	76.4	36.3
MGA_5540	LOCUS_55310	sequence1:5963995..5965167(+)	partial			WP_010926041.1	aromatic ring-hydroxylating dioxygenase subunit alpha	51.3	51.4	33.0
MGA_5546	LOCUS_55370	sequence1:5972942..5973415(+)	partial			WP_003400664.1	SRPBCC family protein	98.1	68.8	73.4
MGA_5552	LOCUS_55430	sequence1:5976591..5977202(-)	partial			WP_003400961.1	TetR/AcrR family transcriptional regulator	99.0	74.6	27.6
MGA_5599	LOCUS_55900	sequence1:6029911..6031620(-)	partial			WP_003401347.1	PPE family protein	59.8	60.6	61.2
MGA_5682	LOCUS_56730	sequence1:6118042..6118587(+)	frameshift		6117914	WP_003400961.1	TetR/AcrR family transcriptional regulator	97.8	63.2	63.3
MGA_5716	LOCUS_57070	sequence1:6151876..6152460(+)	partial			WP_011730120.1	hypothetical protein	69.1	80.2	47.8
MGA_5736	LOCUS_57270	sequence1:6171764..6172480(+)	partial			WP_162618345.1	Mce protein	69.3	75.3	70.3
MGA_5759	LOCUS_57500	sequence1:6194347..6194802(+)	partial			WP_010886090.1	PE family protein	61.6	10.5	46.2
MGA_5761	LOCUS_57520	sequence1:6195763..6196746(-)	partial			WP_000857443.1	enoyl-[acyl-carrier-protein] reductase FabK	64.5	62.0	35.5
MGA_5766	LOCUS_57570	sequence1:6201244..6202239(+)	partial			WP_003908487.1	Ig-like domain-containing protein	76.7	71.9	69.7
MGA_5789	LOCUS_57800	sequence1:6228228..6228659(-)	partial			WP_013228395.1	CD225/dispanin family protein	63.6	70.5	52.7
