{
    "type": "genome",
    "identifier": "GCF_010731875.1",
    "organism": "Mycolicibacterium sarraceniae",
    "title": "Mycolicibacterium sarraceniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Infection Metagenomics, Osaka University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010731875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00153217",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1534348",
        "species_taxid": "1534348",
        "organism_name": "Mycolicibacterium sarraceniae",
        "infraspecific_name": "strain=JCM 30395",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/06",
        "asm_name": "ASM1073187v1",
        "asm_submitter": "Department of Infection Metagenomics, Osaka University",
        "gbrs_paired_asm": "GCA_010731875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/731/875/GCF_010731875.1_ASM1073187v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4828255",
        "genome_size_ungapped": "4828255",
        "gc_percent": "66.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010731875.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "4858",
        "protein_coding_gene_count": "4393",
        "non_coding_gene_count": "55",
        "pubmed_id": "31287781"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-06",
    "dateModified": "2020-02-06",
    "datePublished": "2020-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycolicibacterium sarraceniae"
        ],
        "sample_taxid": [
            "1534348"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.330 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4828255",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4828255",
        "N50 (bp)": "4828255",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "4893",
        "Average Protein Length": "297.9",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycolicibacterium sarraceniae",
                "strain": "strain=JCM 30395",
                "accession": "GCA_010731875.1",
                "taxid": 1534348,
                "species_taxid": 1534348,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1609,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycolicibacterium helvum",
                "strain": "strain=JCM 30396",
                "accession": "GCA_010731895.1",
                "taxid": 1534349,
                "species_taxid": 1534349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8216,
                "matched_fragments": 1296,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium sphagni",
                "strain": "strain=ATCC 33027",
                "accession": "GCA_002250655.1",
                "taxid": 1786,
                "species_taxid": 1786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3461,
                "matched_fragments": 1259,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium vinylchloridicum",
                "strain": "strain=CECT 8761",
                "accession": "GCA_013404075.1",
                "taxid": 2736928,
                "species_taxid": 2736928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1756,
                "matched_fragments": 1237,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium pallens",
                "strain": "strain=JCM 16370",
                "accession": "GCA_019456675.1",
                "taxid": 370524,
                "species_taxid": 370524,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8362,
                "matched_fragments": 1203,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium crocinum",
                "strain": "strain=JCM 16369",
                "accession": "GCA_022370635.3",
                "taxid": 388459,
                "species_taxid": 388459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.737,
                "matched_fragments": 1197,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium aichiense",
                "strain": "strain=NCTC10820",
                "accession": "GCA_900453085.1",
                "taxid": 1799,
                "species_taxid": 1799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6004,
                "matched_fragments": 1202,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium aromaticivorans",
                "strain": "strain=JS19b1",
                "accession": "GCA_000559085.2",
                "taxid": 318425,
                "species_taxid": 318425,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4289,
                "matched_fragments": 1192,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium rhodesiae",
                "strain": "strain=DSM 44223",
                "accession": "GCA_002086695.1",
                "taxid": 36814,
                "species_taxid": 36814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4115,
                "matched_fragments": 1191,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium anyangense",
                "strain": "strain=JCM 30275",
                "accession": "GCA_010731855.1",
                "taxid": 1431246,
                "species_taxid": 1431246,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4149,
                "matched_fragments": 983,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum",
                "strain": "strain=JCM 6387",
                "accession": "GCA_022179545.1",
                "taxid": 144549,
                "species_taxid": 1766,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2537,
                "matched_fragments": 713,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium lacusdiani",
                "strain": "strain=JXJ CY 35",
                "accession": "GCA_021916785.1",
                "taxid": 2895283,
                "species_taxid": 2895283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1514,
                "matched_fragments": 689,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium arabiense",
                "strain": "strain=JCM 18538",
                "accession": "GCA_010731815.2",
                "taxid": 1286181,
                "species_taxid": 1286181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.15,
                "matched_fragments": 721,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010731875.1",
                "gtdb_species": "s__Mycobacterium sarraceniae",
                "ani": 100.0,
                "matched_fragments": 1609,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013337765.1",
                "gtdb_species": "s__Mycobacterium sp003053865",
                "ani": 87.2888,
                "matched_fragments": 1261,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.43",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900078375.1",
                "gtdb_species": "s__Mycobacterium sp900078375",
                "ani": 87.1258,
                "matched_fragments": 1257,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010731895.1",
                "gtdb_species": "s__Mycobacterium helvum",
                "ani": 86.8103,
                "matched_fragments": 1299,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004362315.1",
                "gtdb_species": "s__Mycobacterium sp004362315",
                "ani": 85.4339,
                "matched_fragments": 1268,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_002250655.1",
                "gtdb_species": "s__Mycobacterium sphagni",
                "ani": 85.3468,
                "matched_fragments": 1259,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000230935.1",
                "gtdb_species": "s__Mycobacterium rhodesiae_B",
                "ani": 85.2122,
                "matched_fragments": 1232,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013404075.1",
                "gtdb_species": "s__Mycobacterium sp013404075",
                "ani": 85.1837,
                "matched_fragments": 1235,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001886515.1",
                "gtdb_species": "s__Mycobacterium sp001886515",
                "ani": 83.9396,
                "matched_fragments": 1183,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002887815.1",
                "gtdb_species": "s__Mycobacterium sp002887815",
                "ani": 83.6129,
                "matched_fragments": 1191,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010729305.1",
                "gtdb_species": "s__Mycobacterium psychrotolerans",
                "ani": 79.5303,
                "matched_fragments": 772,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycolicibacterium",
        "sarraceniae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}