{ "type": "genome", "identifier": "GCF_010747415.1", "organism": "Spirosoma agri", "title": "Spirosoma agri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Justus-Liebig University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010747415.1", "bioproject": "PRJNA224116", "biosample": "SAMN13335970", "wgs_master": "JAAGNZ000000000.1", "refseq_category": "reference genome", "taxid": "1987381", "species_taxid": "1987381", "organism_name": "Spirosoma agri", "infraspecific_name": "strain=KCTC 52727", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/18", "asm_name": "ASM1074741v1", "asm_submitter": "Justus-Liebig University", "gbrs_paired_asm": "GCA_010747415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/747/415/GCF_010747415.1_ASM1074741v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7173216", "genome_size_ungapped": "7173216", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010747415.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5928", "protein_coding_gene_count": "5844", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-18", "dateModified": "2020-02-18", "datePublished": "2020-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma agri" ], "sample_taxid": [ "1987381" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7173216", "Number of Sequences": "36", "Longest Sequences (bp)": "4002759", "N50 (bp)": "4002759", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.6", "Number of CDSs": "5802", "Average Protein Length": "350.9", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2378, "total_fragments": 2378, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 79.062, "matched_fragments": 1036, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 78.9649, "matched_fragments": 986, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 77.4721, "matched_fragments": 408, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.4483, "matched_fragments": 524, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.3999, "matched_fragments": 474, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.3888, "matched_fragments": 396, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.2845, "matched_fragments": 501, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 77.2749, "matched_fragments": 417, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 77.1381, "matched_fragments": 410, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.0459, "matched_fragments": 432, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.016, "matched_fragments": 424, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, "relation_to_type": "type", "validated": true, "ani": 76.7868, "matched_fragments": 368, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 76.2325, "matched_fragments": 262, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aestuarina", "strain": "strain=BUZ 2", "accession": "GCA_000331105.1", "taxid": 651143, "species_taxid": 651143, "relation_to_type": "type", "validated": true, "ani": 76.1969, "matched_fragments": 224, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 76.0996, "matched_fragments": 158, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella arboricola", "strain": "strain=DSM 21851", "accession": "GCA_003259745.1", "taxid": 643671, "species_taxid": 643671, "relation_to_type": "type", "validated": true, "ani": 76.0602, "matched_fragments": 213, "total_fragments": 2378, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010747415.1", "gtdb_species": "s__Spirosoma agri", "ani": 100.0, "matched_fragments": 2378, "total_fragments": 2378, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010233585.1", "gtdb_species": "s__Spirosoma endbachense", "ani": 79.056, "matched_fragments": 1037, "total_fragments": 2378, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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