{ "type": "genome", "identifier": "GCF_010894475.1", "organism": "Myxococcus vastator", "title": "Myxococcus vastator", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aberystwyth University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010894475.1", "bioproject": "PRJNA224116", "biosample": "SAMN14091212", "wgs_master": "JAAIYB000000000.1", "refseq_category": "reference genome", "taxid": "2709664", "species_taxid": "2709664", "organism_name": "Myxococcus vastator", "infraspecific_name": "strain=AM301", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/21", "asm_name": "ASM1089447v1", "asm_submitter": "Aberystwyth University", "gbrs_paired_asm": "GCA_010894475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/894/475/GCF_010894475.1_ASM1089447v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8990913", "genome_size_ungapped": "8990913", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1008", "contig_count": "1008", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010894475.1-RS_2024_08_27", "annotation_date": "2024-08-27", "total_gene_count": "7753", "protein_coding_gene_count": "7353", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-21", "dateModified": "2020-02-21", "datePublished": "2020-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcus vastator" ], "sample_taxid": [ "2709664" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Wales, Anglesey" ], "sample_host_location_id": [], "data_size": "2.462 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8990913", "Number of Sequences": "1008", "Longest Sequences (bp)": "63048", "N50 (bp)": "15871", "Gap Ratio (%)": "0.000078", "GCcontent (%)": "69.9", "Number of CDSs": "6704", "Average Protein Length": "351.7", "Coding Ratio (%)": "78.7", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Myxococcus vastator", "strain": "strain=AM301", "accession": "GCA_010894475.1", "taxid": 2709664, "species_taxid": 2709664, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2490, "total_fragments": 2534, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Myxococcus virescens", "strain": "strain=NBRC 100334", "accession": "GCA_007989405.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 93.7477, "matched_fragments": 2136, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus virescens", "strain": "strain=DSM 2260", "accession": "GCA_900101905.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 93.6612, "matched_fragments": 2165, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus xanthus", "strain": "strain=DSM 16526", "accession": "GCA_900106535.1", "taxid": 34, "species_taxid": 34, "relation_to_type": "type", "validated": true, "ani": 93.6084, "matched_fragments": 2161, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 84.9466, "matched_fragments": 1909, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 84.9106, "matched_fragments": 1896, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 84.7823, "matched_fragments": 1819, "total_fragments": 2534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 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