{
    "type": "genome",
    "identifier": "GCF_010977555.1",
    "organism": "Caulobacter rhizosphaerae",
    "title": "Caulobacter rhizosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Forestry University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_010977555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14056236",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2010972",
        "species_taxid": "2010972",
        "organism_name": "Caulobacter rhizosphaerae",
        "infraspecific_name": "strain=KCTC 52515",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/24",
        "asm_name": "ASM1097755v1",
        "asm_submitter": "Nanjing Forestry University",
        "gbrs_paired_asm": "GCA_010977555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/977/555/GCF_010977555.1_ASM1097755v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5963910",
        "genome_size_ungapped": "5963910",
        "gc_percent": "68.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_010977555.1-RS_2024_04_23",
        "annotation_date": "2024-04-23",
        "total_gene_count": "5457",
        "protein_coding_gene_count": "5317",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-24",
    "dateModified": "2020-02-24",
    "datePublished": "2020-02-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caulobacter rhizosphaerae"
        ],
        "sample_taxid": [
            "2010972"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.600 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5963910",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5732418",
        "N50 (bp)": "5732418",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.6",
        "Number of CDSs": "5420",
        "Average Protein Length": "328.4",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_010977555.1",
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                "validated": true,
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                "matched_fragments": 1981,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_014645055.1",
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                "species_taxid": 2010972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9693,
                "matched_fragments": 1937,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Caulobacter soli",
                "strain": "strain=Ji-3-8",
                "accession": "GCA_011045195.1",
                "taxid": 2708539,
                "species_taxid": 2708539,
                "relation_to_type": "type",
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                "ani": 88.982,
                "matched_fragments": 1259,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter hibisci",
                "strain": "strain=KACC 18849",
                "accession": "GCA_016135805.1",
                "taxid": 2035993,
                "species_taxid": 2035993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.693,
                "matched_fragments": 1131,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter flavus",
                "strain": "strain=RHGG3",
                "accession": "GCA_003722335.1",
                "taxid": 1679497,
                "species_taxid": 1679497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4627,
                "matched_fragments": 1148,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter flavus",
                "strain": "strain=CGMCC1 15093",
                "accession": "GCA_002858845.1",
                "taxid": 1679497,
                "species_taxid": 1679497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3681,
                "matched_fragments": 1125,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter radicis",
                "strain": "strain=695",
                "accession": "GCA_003094615.1",
                "taxid": 2172650,
                "species_taxid": 2172650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3464,
                "matched_fragments": 1133,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter zeae",
                "strain": "strain=410",
                "accession": "GCA_002858925.1",
                "taxid": 2055137,
                "species_taxid": 2055137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.23,
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                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter henricii",
                "strain": "strain=CB4",
                "accession": "GCA_001414055.1",
                "taxid": 69395,
                "species_taxid": 69395,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.61,
                "matched_fragments": 853,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium aquaticum",
                "strain": "strain=KACC 18306",
                "accession": "GCA_022695515.1",
                "taxid": 1763816,
                "species_taxid": 1763816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7705,
                "matched_fragments": 711,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium glaciei",
                "strain": "strain=20VBR1",
                "accession": "GCA_016772415.2",
                "taxid": 2803784,
                "species_taxid": 2803784,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2502,
                "matched_fragments": 661,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas albigilva",
                "strain": "strain=KEME 9005-016",
                "accession": "GCA_023503965.1",
                "taxid": 1312364,
                "species_taxid": 1312364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9828,
                "matched_fragments": 505,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas guildfordensis",
                "strain": "strain=Sa3CVA3",
                "accession": "GCA_014836405.1",
                "taxid": 2762241,
                "species_taxid": 2762241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.631,
                "matched_fragments": 415,
                "total_fragments": 1987,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010977555.1",
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                "matched_fragments": 1981,
                "total_fragments": 1987,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000426025.1",
                "gtdb_species": "s__Caulobacter sp000426025",
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                "total_fragments": 1987,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004342605.1",
                "gtdb_species": "s__Caulobacter sp004342605",
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                "matched_fragments": 1471,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007828975.1",
                "gtdb_species": "s__Caulobacter henricii_D",
                "ani": 92.0123,
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                "total_fragments": 1987,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000745545.1",
                "gtdb_species": "s__Caulobacter henricii_C",
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                "matched_fragments": 1531,
                "total_fragments": 1987,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "99.38",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900114015.1",
                "gtdb_species": "s__Caulobacter sp900114015",
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                "matched_fragments": 1427,
                "total_fragments": 1987,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000712075.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001426905.1",
                "gtdb_species": "s__Caulobacter sp001426905",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "99.12",
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                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "rhizosphaerae"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}