{ "type": "genome", "identifier": "GCF_010983895.1", "organism": "Nitrogeniibacter mangrovi", "title": "Nitrogeniibacter mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010983895.1", "bioproject": "PRJNA224116", "biosample": "SAMN14086252", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2016596", "species_taxid": "2016596", "organism_name": "Nitrogeniibacter mangrovi", "infraspecific_name": "strain=M9-3-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/24", "asm_name": "ASM1098389v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_010983895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/983/895/GCF_010983895.1_ASM1098389v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4236644", "genome_size_ungapped": "4236644", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010983895.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3975", "protein_coding_gene_count": "3862", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-24", "dateModified": "2020-02-24", "datePublished": "2020-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitrogeniibacter mangrovi" ], "sample_taxid": [ "2016596" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.152 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4236644", "Number of Sequences": "1", "Longest Sequences (bp)": "4236644", "N50 (bp)": "4236644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "3931", "Average Protein Length": "329.5", "Coding Ratio (%)": "91.7", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1411, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nitrogeniibacter aestuarii", "strain": "strain=H1-1-2A", "accession": "GCA_017309585.1", "taxid": 2815343, "species_taxid": 2815343, "relation_to_type": "type", "validated": true, "ani": 81.6618, "matched_fragments": 850, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 80.11, "matched_fragments": 601, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 80.0599, "matched_fragments": 501, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus 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"GCA_004361735.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 79.3265, "matched_fragments": 543, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 79.2963, "matched_fragments": 539, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 79.2456, "matched_fragments": 488, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": 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